PE
Pannel
either Plugins-->PerkinElmer
or File -->Import
This
opens a pannel with four buttons. The
functionality of each is described below.
Open...
This opens the raw files acquired with a
PerkinElmer Ultraview
(E)RS.
The parameters (e.g. number of channels, number
of slices, number of time points) of the image
series are read from the cfg/tim
file. The raw-files
are imported into a stack and afterwards
automatically converted to an Image5D stack.
ATTENTION: If you created a time series of a
large volume ImageJ might run out of memory!
How to increase your memory
Z-project...
This opens the raw files acquired with a
PerkinElmer Ultraview
(E)RS.
The parameters (e.g. number of channels, number
of slices, number of time points) of the image
series are read from the cfg/tim
file. The raw-files
are imported into a stack and a Maximum
Projection along the z-axis is performed for
every time point and every channel. The
resulting image-stack is converted to an Image5D
stack.
Batch Z-projection...
You have to select a folder. The plugins works
with all subfolders of this folder if they
contain raw data from an PerkinElmer Ultraview
(E)RS.
The images of every folder are opened, a maximum
intensity projection along the z-axis is
performed and the resulting stack (one image per
channel and time point) is saved as TIFF-stack
(if you checked the tick box for saving in
addition you also have the option to convert the
resulting stack to 8-Bit).
File Info
Opens a
window where you can find the meta information
to the loaded image. |
