Primers used to generate C. elegans RNAi feeding plasmids in the Mattaj lab

C. elegans gene Mammalian gene RNAi primer 1 RNAi primer 2 Exon content Length [bp]
ima-1 T19B10.7 Importin alpha AGCCAGACGACGCGATTGCTTATT GACAAACGCAGCTTCTCGCCGAGA 100% 795
ima-2 F26B1.3 Importin alpha CACACGGACCGTCAAGTCCGTCA ATTCTGAACAGTGAGCATAAGAGT 100% 576
ima-3 F32E10.4 Importin alpha AACGGTGTCTATGAGGATGTTGGT TTACTTTCCAAAGTTCCATCCTCCGT 100% 798
imb-1 F28B3.8 Importin beta cggggtaccGGAACAAGCTGCTTCACATG tgctctagaGAACAGATTGAAGAAGTTCCG 100% 510
imb-1 F28B3.8 Importin beta cggggtaccGGAAAGCCTGCTGCAAATGG tgctctagaGTCAGGAATTGCCTTCAATCC 81% 838
imb-2 R06A4.4 Transportin cggggtaccCAACACGCTCACTCCACAGACAGA tgcctcgagCGACTCCACAAGGCCACCAAGA 100% 895
imb-3 C53D5.6 RanBP5 cggggtaccTCCCAATCATCGCCGAAAGCGC tgctctagaGGGCGGTAACGAGCGGCACGA 100% 990
imb-4 ZK742.1 CRM1 cggggtaccCTTGTCGCGTTCATCAAAGAGCAC tgctctagaGTCCAACAGCCTCGTAGAATACGT 100% 961
imb-5 Y48G1A.5 CAS CAAGAGCCTCTAACTCTGTTGCTA GAGATGTGTGGCCACTTGTGTGAT 100% 849
imb-6 C49H3.10 Xpo-t cggggtaccGCAACATGCTTCAAAGTCCACGAG tgcctcgagCCTGAAGTGATGCTCTCGCAGCA 100% 954
npp-1 K07F5.13b Nup54 cggggtaccAGCGAACCGACGATGAGGGATTTG tgctctagaGGGCAAGAAGTGTATCAGCTTTAGC 100% 720
npp-1 K07F5.13b Nup54 cggggtaccAGCGAACCGACGATGAGGGATTTG tgctctagaGGGCAAGAAGTGTATCAGCTTTAGC 83% 864
npp-2 T01G9.4 Nup85 CAGATGACGGATGTCGCTCGAG ACCCTCCTCTTCCTCTTCTCCA 90% 1001
npp-2 (JA) T01G9.4 Nup85 GTGTCTCACAGCAGTTCCGA TTCGGTACCACACGCAATAA 71% 1198
npp-3 K12D12.2 Nup205 tgctctagaCCCCGCGAAGCTTATGGAGAC cggggtaccGCCAAATTCTCGGTGCGGATCC 100% 896
npp-4 Y54E5A.4 Nup45, Nup58 tgctctagaGACTGGTTCCAGTGCCCAATCCA cggggtaccACACCTCGCCGAGCTGTGCAATT 100% 449
npp-5 F07A11.3 Nup107 cgagcatgcGAGAAAGCGATCAGCGAACAG tgcaagcttCTCCGACTGTTTCATTTGCGAA 100% 760
npp-6 (JA) F56A3.3a Nup160 GAAGGGCAGTTGGTCATTGT TTCTGCTGAAATTTCCGGTT 91% 1182
npp-7 T19B4.2 Nup153 TTGTTTGGTGGTTCAACTGGA GGTTGAGGCAGTAGAGGCAGG 100% 646
npp-8 Y41D4B.19b Nup155 ATAGCCCTTGACGGAGCAACAGTG ACGAACTCTTTCATTAGGTGTTCCA 100% 564
npp-9 F59A2.1 Nup358 AGCAGTAGCATTTTCGGTGGTG CTCCTCGTCCTCTTCACCAG 100% 684
npp-10 ZK328.5b Nup98-96 CGGCTGACCGAAAGCATTTGTCGC GCGACAAATGCTTTCGGTCAGCCG 100% 582
npp-10 ZK328.5b Nup98-96 TCTAATCGTGGAGATCTGCCCGGA TCAAATTCAATTGTGAATCTTTCG 100% 884
npp-11 F53F10.5 Nup62 GGAGGTCTTTTCAGCATTGGT CAATGGTGTTGAAGTGAGCCCT 100% 747
npp-12 T23H2.1 gp210 cggggtaccGGCCAAGTTACTATTCAAGCTCAAG tgcctcgagCTCTTCCACCAGTTTCCACTTTCC 100% 901
npp-12 T23H2.1 gp210 taggatccaggaggttggCTTGAAAGTCGTGGGGTAGTAGATG ttggatccTTAGTAAGACCAAAGTCTATTGTCTCC 88% 402
npp-13 Y37E3.15a Nup93 AGGATGCTACAGTTTACGGAGA CCAATTCTCCAGTGTATCAGCCA 100% 1170
npp-14 C03D6.4 Nup214 ATGAACGAAGATGTTGCTGAAGA ATCGGCAGCAGTCTCCAGTTT 92% 2160
npp-15 C29E4.4 Nup133 cgagctCGGTATCTCTATACC gaagCTTCTCCCAGCATTGTTCC 100% 623
npp-16 Y56A3A.17b Nup50 tagggtaccGGATCATGTGGCACAGCTCA tgcaagcttGTGAGCCTGAATTACTCGGA 100% 512
npp-17 F10G8.3 RAE1 tagggtaccGTGTGGATGTTCAATGATGCCA tgcaagcttCTCCAATCATAGCCCAATGCA 100% 821
npp-18 Y43F4B.4 Seh1 tagggtaccAGCAAAAAGAATCCCAATGGA tgcaagcttTTCAAATCAGTAATCGGGCA 100% 388
npp-19 R06F6.5a Nup35 tgctctagaCACCGCTAGCCCGCTCAA tgcctcgagCTGATCGAGGAGAGTTCCGT 100% 626
npp-19 R06F6.5a Nup35 tgctctagaCACCGCTAGCCCGCTCAA tgcctcgagCTGATCGAGGAGAGTTCCGT 93% 679
npp-20 Y77E11A.13a Sec13R tagggtaccATGACCACGGTCCGCCAGAGA tgcaagctTGAGCTCCCGGAGCTCCGA 100% 935
ran-1 K01G5.4 Ran ctagctagcATGTCTGGTGGAGACGGCATCC taaggcgccTTAAAGATCATCGTCGTCATCTG 100% 648
ran-2 C29E4.3 RanGAP GCTCTTGAAACGGTTGAATGGT CAATAGCTCTTTGCAAAGCTGGCT 100% 745
ran-3 C26D10.1 RCC1 TACATGTGCGATGAATCTGGTGA TCTCGTCTTCGTCTTTCAATCCGA 100% 568
ran-3 C26D10.1 RCC1 gttctagaATGTCAACTGCGGAGCAAAGA cggggtaccTCCTTCCTTCTCGATATCTTCCTC 100% 732
























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Author: Peter Askjaer; Last change: 01 08 2003; Mattaj group