premrna

Yeast Spliceosomal Introns (1)

Splicing of nuclear spliceosomal introns also involves two transesterification reactions. This process is catalyzed by a large ribonucleoprotein machinery named the spliceosome. This complex and dynamic enzyme is made by the ordered assembly onto the intron of 5 snRNPs (small nuclear RiboNucloProteins) as well as non-snRNP proteins; in total more than 100 proteins may contribute to the spliceosome (2). Conserved sequences are present at the 5' and 3' end of spliceosomal introns, at their branchpoint and, to a lesser extent, in flanking exon sequences. The following table presents a list of 255 yeast spliceosomal introns and putative introns present in 250 genes. Partial sequences of the exon 1, 5' and 3' splice sites and the branch point that contains conserved sequence signal are provided. When available, we also provide the transcription frequency of the corresponding genes (i.e., number of transcripts produced per unit of time) determined by microarray experiments (3). Additional information on yeast spliceosomal introns can be found in the Ares Lab Intron Site.

ORF Name (linked to MIPS)	EMBL database Accession number	Transcription frequency (from (3))	Exon 1	5’ splice site	Branch point	3’ splice site	Intron size (nt)
YAL001C	L22015	1.1	ggaa	gtatgtt	tttactaacga	taacgacacattgaag	90
YAL003W	L22015	52.3	aagg	gtatgtt	attactaacaa	tctccttttaaaatag	366
YAL016W	L05146	4.5	ctgc	gtatgtc	aatactaacgt	ataattgagtggtcag	883
YAL030W	U12980	2.3	agct	gtaagta	tatactaactt	tcgtgtttatttttag	113
YAL042W	U12980	10.4	gcgg	gtatgaa	agtactaacgg	aacttttcacttttag	425
YBL018C	Z35779	3.4	tcaa	gtatgta	actactaacgt	actttaatatttatag	75
YBL026W	Z35787	4.9	agag	gtatgtt	agtactaacgt	ttgtgtttccactcag	128
YBL027W	Z35788	60.5	aaat	gtatgtt	tttactaacat	aaactttttttcacag	384
YBL040C	Z35801	6.1	agtg	gtatgtt	cttactaacag	ccgaccatcaagacag	97
YBL050W	Z35811	2	aaga	gtatgta	attactaacat	ttcccgttgtgttaag	116
YBL059W	Z35820	1.2	aaag	gtatgca	tttactaacat	taacttatttacatag	69
YBL072C	Z35833	160	aaaa	gtatgtg	tttactaacaa	aaattttctattacag	308
YBL087C	Z35848	147	ctca	gtatgtt	tttactaacaa	gatcttttttaactag	504
YBL092W	Z35853	108.5	aaaa	gtatgtg	tatactaacaa	ttttttttttgattag	333
YBR048W	Z35917	38.3	aaag	gtatgaa	tttactaacat	gctatttttcatacag	511
YBR078W	Z35947	18.6	gctg	gtatgta	aatactaacac	ttctttatctaagcag	330
YBR082C	Z35951	14.9	aaag	gtatgtc	tttactaacaa	catgctattgaactag	95
YBR084CA	Z35953	64.4	aaat	gtatgtg	gataataacta	aacatgactttaacag	506
YBR090C	Z35959	8.8	caaa	gtatgta	agtactaacta	taactaattaacttag	357
YBR119W	Z35988	1.1	cagc	gtatgta	tctactaacgt	tgaccaataaaaacag	89
YBR181C	Z36050	87.2	gaag	gtatgta	tttactaacaa	gtattatttataacag	352
YBR189W	Z36058	76.2	ccaa	gtacgta	ttgactaacaa	acttttttttttttag	413
YBR191W	Z36059	202.4	aatc	gtatgtc	aatactaacat	tttccttataatacag	388
YBR215W	Z36084	0.8	aaag	gtatgtt	actactaacaa	aacaagactgatacag	486
YBR219C	Z36088	4.2	agat	gtacgta	atgactaacct	attaattttctaatag	421
YBR230C	Z36099	3.8	caac	gtatgta	ttgactaacgt	tctttcttttccccag	97
YCR029CA	X59720	10.6	aagg	gtatgtt	tttactaacat	tacataatttattcag	83
YCR031C	X59720	68.6	tcta	gtatgtt	gatactaacaa	tactatttccatttag	307
YCR033W	X59720	0.2	ttgc	gtacgta	cctactaactt	actaacttgtgcatag	336
YCR097W	X59720	3.4	taat	gtatgtt	tttactaacaa	actaacaatacttcag	54
YCR097W	X59720	3.4	ttgg	gtatgta	tatactaacaa	tactaacaatttgtag	52
YDL012C	Z74060	3.5	aagc	gtacgtt	cgtactaacga	atcactttcgattcag	86
YDL029W	Z74077	7.1	attg	gtatgtt	aatactaacca	aaccatctcgatatag	123
YDL061C	Z74109	58.2	aaat	gtatgtg	aatactaacat	aacttattggttatag	409
YDL064W	Z74112	8.2	aaag	gtaagta	tatactaacaa	tttacttgaataacag	110
YDL075W	Z74123	104.4	aaga	gtatgtg	gttactaacaa	attttatttttaatag	421
YDL079C	Z74127	0.3	acta	gtatgta	tatactaacat	actaacataggtttag	292
YDL082W	Z74130	82.6	atgg	gtatgtc	tatactaacaa	aattgaattatatcag	365
YDL083C	Z74131	109.5	ccaa	gtatgtt	tttactaacat	tttggttttataacag	432
YDL108W	Z74156	1.7	aagg	gtatgtg	gatactaacgt	tgatgattcatcgcag	81
YDL125C	Z74173	16.4	aaaa	gtatgtc	aatactaacaa	atccgctatgcaacag	111
YDL130W	Z74178	120	caac	gtatgta	tttactaacaa	tgtatcattgaattag	301
YDL136W	Z74184	82.6	aatg	gtatgta	tttactaacag	attttcttatcaatag	405
YDL189W	Z74237	2.1	gaca	gtatgtt	cgtactaacaa	aagtaggtgatgacag	146
YDL191W	Z74239	113.1	aatg	gtatgtt	aatactaacgt	tttatcctattaatag	491
YDL219W	Z74267	10.1	caag	gtatgtt	tttactaacac	tctatctatgtgacag	71
YDR005C	Z48008	1.7	gaaa	gtatgtt	attactaacat	tccttttcttccttag	80
YDR025W	Z47814	71.3	aaag	gtatgaa	cttactaacct	atcatcctttttttag	339
YDR059C	Z49209	0.4	ggag	gtatgtt	attactaacat	gaacttttttccgaag	80
YDR064W	Z49209	83.7	tgcc	gtatgtt	gttactaacat	atattactttaaacag	539
YDR092W	Z50111	8.4	caag	gtatgtt	catactaacgc	gtgaactttcatatag	268
YDR129C	Z48179	6.1	acaa	gtatgta	tatactaacaa	actcttctgcgattag	111
YDR139C	Z48179	14.2	aaat	gtatgtt	cttactaacga	ctaacgaccaggatag	73
YDR305C	U28374	1.3	ctat	gtatgca	gttactaacta	ctctgcttctttacag	89
YDR367W	U28373	4.7	aaaa	gtatgtt	tttactaacct	tatttttttttcatag	101
YDR381W	U72633	16.2	aaga	gtatgtt	atgactaactt	tttttttttattatag	766
YDR397C	Y09266	8	aagg	gtatgtt	tatactaactt	cactgaatgatcttag	92
YDR424C	U33007	6.1	acgc	gtatgtc	tttactaactc	ctaactcgaggaagag	96
YDR424C	U33007	6.1	cata	gtatgta	tttactaacaa	caaggagaaaacttag	80
YDR447C	U33007	86.2	aatg	gtacgta	tttactaactt	attgctatttttatag	314
YDR450W	U33007	95.4	tacg	gtatgtt	tttactaacgt	aaatttttttacgcag	435
YDR471W	U33050	79.9	gttg	gtacgta	tttactaacaa	tttcgtattatcgtag	384
YDR500C	U33057	87.6	ggta	gtatgta	tttactaacga	ttttcattttaaacag	389
YEL012W	U18530	0.7	tgag	gtatgtt	atcactaacaa	tcgtttaatgaaacag	123
YER003C	U18778	8	gcag	gtatgtg	ctaactaacgc	gtacgactctatgtag	93
YER007CA	U18778	10	agaa	gtatgtc	attactaacat	acatcatcatcgatag	103
YER044CA	U18796		aatc	gtacgtg	tttactaactt	atattatctatgacag	88
YER056CA	U18813	59	ccat	gtatgtt	cgtactaacat	aaacattttcaaatag	397
YER074W	U18814	63.4	aatg	gtatgtt	tttactaacaa	aattgttttttctcag	466
YER093CA	U18839	0.9	aaat	gtatgta	gttactaacac	cgtctactgaaagcag	75
YER102W	U18839	162.7	aaac	gtatgtt	tttactaacaa	acaaaaattaaaatag	360
YER117W	U18916	133.6	ttct	gtatgtt	tttactaacag	cattttttttaaatag	471
YER131W	U18916	36.6	aaaa	gtatgtt	tttactaactt	tgtatgtaatttttag	361
YER133W	U18916	9.2	taaa	gtatgtt	tttactaactt	ttttttttttttttag	525
YER179W	U18922	0.3	caat	gtatgtt	tttactaacta	aaaggaacttttatag	92
YFL034CA	D50617		aaac	gtacgtt	attactaacat	cataaaactgtaacag	321
YFL034CB	D50617	1	tcaa	gtatgtt	tttactaacta	atactttgcaaaacag	114
YFL039C	D50617	45.5	tctg	gtatgtt	tgtactaacat	tatattatatgtttag	308
YFR024CA	D50617		caaa	gtatgtt	tttactaacta	cgaagattttggctag	118
YFR031CA	D50617		atgg	gtatgtc	tatactaacag	attattttttattcag	147
YFR032CA	D50617		gaaa	gtacgtt	tttactaacct	tcatcgtcttctccag	331
YGL030W	Z72552	89.9	gatg	gtcagta	tctactaacaa	gtttacatttcaacag	230
YGL031C	Z72553	175.3	agag	gtatgtc	cttactaacat	acgtggattaatatag	456
YGL033W	X55442		gaag	gttaagt	attactaacaa	ccgggtattttatcag	70
YGL076C	Z72598	70.6	ctga	gtatgta	tatgctaacaa	atttgtattattacag	459
YGL076C	Z72598	70.6	ggct	gtatgtt	tttactaacat	ttttattttcatttag	468
YGL087C	Z72609	1.8	aagt	gtatgtt	tatactaacaa	tcctattgtaaatcag	87
YGL103W	Z72625	126.3	tcag	gtatgta	tttactaacga	tattttttttgtacag	511
YGL137W	Z72659	5	aaag	gtatgtt	gttactaacag	tgtacatttatgatag	200
YGL178W	Z72700		tatg	gtatgta	tttactaacac	tcttttattcaatcag	640
YGL187C	Z72709	10.7	aaat	gtatgtt	tatactaacaa	gttgccatacaaatag	342
YGL189C	Z72711	208.4	agta	gtatgtt	gttactaacta	atgaatatttaattag	368
YGL226CA	Z72749		atac	gtacgtt	attactaacaa	ctcaaagagcttccag	179
YGL232W	Z72754	5.5	gaaa	gtatgtc	agtactaacga	cgatcaaaagtaatag	58
YGL251C	Z72773		aata	gta gta	ttgactaacat	ttcagaggacttatag	152
YGR001C	Z72786	2.9	aagt	gtatgta	cttactaactg	cattgatataaaatag	93
YGR027C	Z72812	30.7	tagt	gtatgta	tttactaacaa	ttttactttatcatag	312
YGR029W	Z72814	6.4	aacc	gtatgtt	tttattaacaa	aaattctctataatag	83
YGR034W	Z72819	122.1	atgt	gtatgat	tttactaacaa	tatttgttttcaatag	354
YGR118W	Z72903	173.7	acaa	gtatgtt	tttactaacag	ttttttattattatag	320
YGR148C	Z72933	163.7	aaac	gtatgtc	tgtactaacat	ttgtggtttttcacag	379
YGR183C	Z72968	8.4	aatg	gtatgtt	gttactaacaa	cataaattatgagtag	213
YGR214W	Z72999	55.3	tcaa	gtatgtt	tatactaactt	tttaattttgtttcag	455
YGR225W	Z73010		tgtg	gtacgtt	aatactaacaa	caaatattttctacag	52
YGR296W	Z73081	15.4	gaac	gtacgta	cttactaactg	actttgctgctgctag	148
YHL001W	U10555	91.5	gaag	gtatgtt	tttactaacaa	gttataattactatag	398
YHL050C	U11583	12.1	tagg	gcatgtt	agtactaacgc	cgactaccaactccag	772
YHR001WA	U10555	3.3	ggcg	gtaagta	tatactaacat	aacatttataatacag	63
YHR010W	U10400	122.9	gttg	gtacgta	tttactaacta	tcctttttttacacag	561
YHR012W	U10400	4.2	aact	gtatgtg	aatactaacat	cttcaattgcaagtag	119
YHR016C	U10400	0.5	ccaa	gtatgtt	tgtactaacaa	aatgttttaactacag	168
YHR021C	U10399	192.4	tatg	gtatgtg	attactaacat	atttatttcattacag	550
YHR039CB	U00062	26.5	aatg	gtatgtg	cttactaacat	gtaatattctctttag	162
YHR041C	U00062	4.3	cagc	gtatgta	gttgctaacaa	tcttttatgtatatag	101
YHR077C	U12137	1.4	ggac	gtatgtt	tatactaactt	aattatgtatcaacag	113
YHR097C	U00060	0.8	ataa	gtatgtg	aatactaactt	tccataattattgcag	124
YHR101C	U00059	0.2	aact	gtatgta	cttactaacta	ttgtacttttggatag	87
YHR123W	U10398	2	ataa	gtatgtg	gttactaactt	ttccttttcatgatag	91
YHR141C	U10398	67.2	atgg	gtatgtg	attactaacaa	tatcattttgaaccag	441
YHR203C	U00030	140.7	gacc	gtatgtt	tttactaacaa	acgatttttcatatag	269
YIL004C	Z47047	3.9	caag	gtatgag	tttactaacta	tagcgtgtgtatatag	131
YIL018W	Z47047	164.4	atgg	gtatgtt	tttactaacag	ttcctcatttaaacag	400
YIL052C	Z47047	93.8	ccat	gtatgtt	attactaacat	tctttactacgtacag	472
YIL069C	Z47047	63.4	aatg	gtatgtc	attactaacgt	attttattttttatag	409
YIL106W	Z47047	1.5	attt	gtatgtt	tttattaacaa	taccttttgaaagcag	85
YIL111W	Z47047	2.6	aaga	gcatgta	tttactaacat	agcacaagttttgcag	88
YIL123W	Z47047	15.9	acca	gtatgcc	tttactaacta	ctttatttttttgcag	906
YIL133C	Z47047	119.3	gatg	gtacgta	aatactaacaa	aataatcttcaaccag	290
YIL148W	Z38059	82.1	aaat	gtatgca	cttactaactt	attatttttttaacag	434
YIL177C	Z47047	5	atca	gtatgtg	gatactaacaa	ttatccagagcttcag	388
YJL001W	Z49276	10.7	caat	gtatgta	attactaacta	tcacctaataaaatag	116
YJL024C	Z49299	0.7	atat	gtatgta	attactaacat	atcatttttggtatag	77
YJL041W	Z49316	2.9	aaaa	gtatgtt	tttactaacga	tgatttttaatattag	118
YJL136C	Z49411	156.6	atta	gtacgta	tgtactaacat	tttctttttttactag	460
YJL177W	Z49452	72	tgaa	gtatgtt	tttactaacaa	tttctttttaaaacag	317
YJL189W	Z49464	122.9	ggct	gtatgtt	gttactaacat	tttcccttttaattag	386
YJL191W	Z49466	14.7	aacg	gtacgtg	tttactaacaa	ctcttatcatgtatag	408
YJL205CA	Z49481	6.1	gaaa	gtatgtt	tttactaacgc	ctggtctctattgcag	143
YJL225C	Z49500	11.4	atca	gtatgtg	gatactaacaa	ttatccagagcttcag	388
YJR021C	Z49521	0.3	aacg	gttcgta	tttactaacaa	aacaactgtagtatag	80
YJR079W	Z49578	1.2	atat	gcatgtg	catactaacac	gaaatttccgtggtag	705
YJR094WA	Z49595	122.1	aaat	gtatgca	tttactaacaa	ttttttttttttgcag	275
YJR145C	Z49645	81.2	gacc	gtatgtt	tttactaacga	atttttttccgtacag	256
YKL002W	Z28002	4.4	aaaa	gtatgtt	catactaacgt	ttatttgagtttttag	68
YKL006CA	Z28007	1.7	aaac	gtatgta	gctactaacta	catgtactttaaacag	141
YKL006W	Z28006	106.2	gaag	gtatgtt	tttactaacaa	gttataattattatag	398
YKL023W	Z28023		ttgc	gtacgtt	agtactaactt	tacaatgcaagaatag	408
YKL080W	Z28080	8.9	ctga	gtatgtt	aatactaactt	tctgttttttttttag	541
YKL081W	Z28081	15.8	tatt	gtatgtt	tttactaacat	gatgatgtatatttag	326
YKL156W	Z28156	71	aatg	gtatgtt	tttactaacag	tattcgtctacaacag	350
YKL158W	Z28158	1.2	taaa	gtatgtt	cttactaactt	caactaaaatgaccag	383
YKL180W	Z28180	110.7	tgaa	gtatgtc	tttactaacaa	actatttttattacag	306
YKL186C	Z28186	4	ccct	gtatgta	actactaacca	aacgatttatgcttag	76
YKL190W	Z28190	11.5	aatt	gtatgta	tttactaacac	ctgacactttgaacag	76
YKR004C	Z28229	0.7	caaa	gtatgtc	gctactaacaa	tattgatgtaaattag	104
YKR057W	Z28282	152.9	atta	gtatgtt	ataactaacaa	atttgttttacatcag	322
YKR094C	Z28319	69	aaat	gtatgtt	tttactaacgt	ttccaattttgtacag	368
YLL050C	Z73155	26.4	ctgg	gtatgct	attactaacta	tgaagtttctgtgtag	179
YLL057C	Z73162		cata	gcatgta	actactaacat	tagcacagtaacccag	367
YLR048W	U33756	57.8	tcaa	gtatgta	cttactaacat	tcctctctttttttag	359
YLR061W	Z73233	102.1	aaac	gtatgat	tttactaacat	aatttttttgatatag	389
YLR078C	Z73250	4.1	aatg	gtatgtt	aatactaacag	tactaccatcaaatag	89
YLR128W	Z73300	0.7	catg	gtatgtt	agtactaacac	tgatgcatcattatag	94
YLR185W	U17246	85.2	ggta	gtatgta	tgtactaacaa	ttttctttttaaatag	359
YLR202C	U14913	1.5	ttat	gtatgat	aatactaaccc	agtatactgactacag	116
YLR275W	U17245	2.3	tgtc	gtatgtt	tatactaactt	atttgtatctttccag	90
YLR287CA	U17243	116.6	tatg	gtacgta	tatactaacat	aatattatttatttag	430
YLR306W	U17247	0.4	aatg	gtacgta	aatactaacat	ggctttattcaaatag	134
YLR333C	U19028	56.9	taag	gtatgtg	gacactaacat	ctttcttacgtctcag	423
YLR344W	U19028	31.2	ttag	gtatgtg	aatactaacat	attttcattattttag	447
YLR367W	U19103	17.2	acaa	gtatgtg	aatactaacgt	aaaacatagtaattag	557
YLR367W	U19103	17.2	catg	gtatgtt	aatactaacat	tttactccttatttag	483
YLR388W	U19729	104.1	tagg	gtatgta	tgtactaacaa	tttcctattattgcag	488
YLR406C	U19729	80.1	aaga	gtatgtc	tttactaacag	attgatattaatatag	349
YLR426W	U20939	3.3	gatg	gtatgta	tatactaacat	tgacgaactaacctag	71
YLR448W	U22382	77.4	acaa	gtatgtg	tatactaacta	gatatgtcaattatag	384
YLR464W	U22383	0.8	atca	gtatgtg	gatactaacaa	atccattttgccgtag	279
YML024W	Z46659	110.7	aatg	gtatgtt	tatactaacaa	ttcgtcattttaatag	398
YML025C	Z46659	1	gaaa	gtacgta	tatactaacat	ccattttatgcaatag	99
YML026C	Z46659	114.8	tacg	gtatgtt	attactaacaa	cgcccattacaatcag	401
YML034W	Z46659	0.3	gcaa	gtgagta	tttactaacat	tcctaattttctctag	126
YML056C	Z46729	25.7	actg	gtatgtt	tttactaacat	atctttttgaacacag	408
YML067C	Z38114	8.7	tttc	gtatgtt	ttcactaacaa	aaatttaactttacag	93
YML073C	Z46373	53.9	aaaa	gtatgtt	aatactaacat	tcttttttccatttag	415
YML085C	Z46660	6.1	aatg	gtatgtt	attactaactt	tgatttctctttacag	116
YML094W	Z46660	4.4	aaaa	gtatgta	tttactaactt	catgttcgaaacttag	83
YML124C	Z49218	6.2	aatg	gtatgta	tttactaacag	ttcttttttacaacag	298
YMR033W	Z49213	2.9	tttg	gtacgta	tatactaacaa	caacaattcataacag	86
YMR079W	Z49259	7.3	taca	gtatgtt	tttactaacaa	acttcactttaaatag	156
YMR116C	Z49702	124	taag	gtatgtg	cttactaacaa	aatgatataatgacag	273
YMR125W	D10224	3.2	ggag	gtatgtt	attactaacat	atgattttaccgttag	322
YMR133W	Z47071		atgg	gtatgta	aatactaacta	aaatatgaatgaaaag	116
YMR142C	Z47071	59.7	atgg	gtatgtt	tttactaactg	ttttttatgattatag	402
YMR143W	Z47071	52.2	tcaa	gtatgtt	gttactaacat	tgcattacttctttag	544
YMR194W	Z47815	37.6	acag	gtatgtg	gttactaactg	gtgtccttatatttag	463
YMR201C	Z48755		acta	gtatgtg	tttactaacaa	gagatgagctgtgcag	84
YMR225C	Z49939	2.6	gaag	gtatgta	aatactaacag	atatcattgatttcag	147
YMR230W	Z49939	50.1	caag	gtatgtt	attactaacaa	tcgcatatcgaaatag	410
YMR242C	Z48756	49	attt	gtatgca	catactaacat	cttgttattttatcag	907
YMR248C	Z48639		atta	gtatgtt	gttactaacaa	gtgtacgtgaaggcag	237
YMR292W	X80836	22.2	caaa	gtatgtt	tttactaacaa	acttacttttcactag	82
YMR307W	Z49212		gaat	gtatgaa	gttactaacaa	aattacaccaacacag	201
YNL044W	Z71320	14.3	agcc	gtaagtt	tatactaacgc	ttctatatttctatag	79
YNL050C	Z71326	3.6	agat	gtatgct	tttactaactt	tctaattattttgcag	91
YNL065W	Z71341	15.7	tgcc	gtatgct	tttactaactt	ttatggatttttccag	576
YNL066W	Z71342	14.6	agtc	gtatgtt	tttactaaccc	cccaaatttattttag	346
YNL069C	Z71345	75.5	gatg	gtacgta	tttactaactt	tctccttttattatag	449
YNL096C	Z71372	51.4	agaa	gtatgtt	gttactaactt	gattcttattgtttag	345
YNL112W	Z71388	61.5	atcg	gtatgtt	attactaacag	ttctttattttttcag	1002
YNL130C	Z71406	3.7	attt	gcatgtc	aatactaacta	actaatctgactttag	441
YNL147W	Z71423	8.6	ctcc	gtatgtt	tatactaacat	gaacaaaccacaacag	120
YNL162W	Z71438	96.2	atgg	gtatgtt	tttactaacat	tatttcttctatttag	512
YNL246W	Z71522	2.1	agca	gtatgta	tatactaacaa	tgcggtagatggtcag	95
YNL265C	Z71542	1.1	cact	gtatgtt	tgtactaactg	caaattattgttatag	105
YNL301C	Z71577	60.7	gctc	gtatgta	tttactaacat	cttgtcttaatcacag	432
YNL302C	Z71578	121.4	ttag	gtacgta	tttactaacaa	gcattttttcaattag	551
YNL312W	Z71588	5.9	gcaa	gtatgta	attactaacaa	tgggattccaatacag	108
YNL318C	Z71595		ttgt	gtatgaa	aatactaacaa	gttaacgtattcttag	443
YNL339C	Z71615	16.2	gaac	gtacgta	cttactaactg	actttgctgctgctag	148
YNR053C	Z71668	17.9	tgca	gtatgtt	tttactaacag	ctaactttacaagtag	531
YOL047C	Z74789		taaa	gtatgtt	catactaaccg	gcgtggtccttgttag	187
YOL120C	Z74862	91.3	gctc	gtatgtt	gttactaacat	cattttttttttttag	447
YOL121C	Z74863	64.4	ttag	gtacgta	tttactaacaa	attttgttttctacag	390
YOL127W	Z74869	78.5	tctg	gtatgtg	tttactaacat	tttactttttgtatag	414
YOR096W	Z75004	83.8	agaa	gtatgtt	cttactaacat	tttccttcttttatag	401
YOR122C	Z75030	18.8	caag	gtatgtg	attactaactg	tcctacttttaaacag	209
YOR182C	Z75090	119.4	aatg	gtacgtt	attactaacat	ttcaaattctccttag	411
YOR221C	Z75129	0.9	ggcc	gtatgac	gctactaacct	ctactaaccttcccag	201
YOR234C	Z75142	107.8	agac	gtatgtt	cttactaacag	acttttattttgatag	527
YOR235W	Z75143		ttca	gtatgta	ttgactaacac	ctaacacattctacag	157
YOR293W	Z75201	124	caag	gtatgtt	tttactaactt	ttctttttttatacag	437
YOR312C	Z75220	73.7	tatt	gtatgct	tttactaacaa	tttttatctttaacag	407
YOR318C	Z75226	0.2	atgt	gtatgaa	agtactaacaa	aatttctaatctccag	347
YPL031C	U44030	2.1	caca	gtatgta	aatactaacat	cgagctctatgaacag	102
YPL075W	U41849	1	tatg	gtatgat	aatactaacca	aaacaagtgttgatag	751
YPL079W	U41849	201.6	aatc	gtatgtc	attactaactg	aaaaattataaaacag	421
YPL081W	U41849	12.1	ccaa	gtacgtc	ctcactaacaa	ttatcttgtaaaacag	501
YPL090C	U43281	80.9	gaag	gtatgat	tatactaacaa	tgaaaatttaaaatag	394
YPL129W	U13017	7.4	agct	gtatgtt	aatactaactt	attaaataaccaacag	105
YPL143W	Z73499	115.6	agat	gtatgtt	aatactaacat	ccttttttttttttag	525
YPL144W	X05498		ttca	gtatgtt	ttgactaacac	ctaacacattcaacag	130
YPL175W	Z73531	0.4	caca	gcatgtg	gatactaacca	ataacaatgaaaatag	84
YPL198W	Z73554	34.3	ctga	gtatgtc	tttgctaacat	tttcatttttgaatag	409
YPL198W	Z73554	34.3	agcc	gtatgtt	cttactaacat	atgaatattattttag	407
YPL218W	Z73574	15.1	tggt	gtatgtt	tttactaactt	ttattttactgtacag	139
YPL241C	Z73597	0.8	aagg	gtatgtt	ctaattaacat	ctatttttttgtgtag	80
YPL249CA	Z73605		actg	gtatgtt	gttactaacat	tatttttttcctctag	238
YPL283C	Z73521	15.2	gaac	gtacgta	cttactaactg	actttgctgctgctag	148
YPR004C	Z48951	3.9	caat	gcatgtc	tctactaacta	aacaaacaaaatctag	287
YPR028W	Z49274	18	tacc	gtatgta	tatactaacaa	acatttttttctacag	133
YPR043W	Z49219	92.9	aaat	gtatgat	tttactaacat	tcttttttgaatacag	403
YPR063C	Z49219	7.2	tttc	gtatgtt	tatactaacag	tccctttctaccacag	86
YPR111W	U32445	0.3	taat	gtatgcc	catactaacca	gctttatgcatttcag	420
YPR132W	U40829	118.1	acaa	gtatgta	tttactaacaa	taatcgtttaaaacag	365
YPR187W	U25841	17.4	aggc	gtatgtg	tttactaactt	tatcattgtgatacag	76
YPR202W	Z73537		gaac	gtacgta	cttactaactg	actttgctgctgctag	148

Transcription frequency are from (3)

References

1. Lopez, P. J., and B. Séraphin. 1999. Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice site recognition. RNA 5, 1135-1137.

2. Burge, C. B., T. Tuschl, and P. A. Sharp. 1999. Splicing of Precursors to mRNAs by the Spliceosomes. In R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.), The RNA world, Second edition ed. Cold Spring Harbourg Labortory Press, Cold Spring Harbor.

3. Holstege, F.C., Jennings, E.G., Wyrick, J.J., Lee, T.I., Hengartner, C.J., Green, M.R., Golub, T.R., Lander, E.S., Young, R.A. 1998. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95, 717-728.

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Author: Séraphin@embl-heidelberg.de Last Modified, August 14, 2000