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Electron Tomography Toolbox for Amira

ExtractLabel

Description:

The ExtractLabel module is used to select specific labels out of a labeled image, as e.g. produced from watershed segmentation or simple thresholding. The labels can either be selected by (a) a specific label number or (b) all of them can be selected or (c) according to their properties e.g. labels which contain more than a given number of voxels. The extract label module can provide useful assistance when e.g. a membrane has to be selected, then the label with the highest number of voxels can be selected. When noise needs to be removed, then all labels containing, a small number of voxels could be removed. The operation can be monitored throughout the procedure.

Ports:

Label

This number field specifies a label number.

Add

When this button is pressed, the specified label is added to the output image.

Delete

When this button is pressed, the specified label is removed from the output image.

Min. Volume

This number field specifies the minimum number of voxels which a label should contain. Labels containing less voxels will be deleted.

Add min. volume

When this button is pressed, all labels which contain more voxels than the specified number in Min._volume are added to the output image.

Clear

When this button is pressed, all voxels of the output image will be set to 0.

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