| IDAT1(1) |
IMN |
image location number (1,2,3,...) |
| IDAT1(2) |
IFOL |
number of images following (0,1,,...)
only of importance in the first location |
| IDAT1(3) |
IERROR |
error code for this image during IMAGIC-5 run |
| IDAT1(4) |
NHFR |
number of header records per image (=1 currently)
|
| IDAT1(5) |
NMONTH |
creation month |
| IDAT1(6) |
NDAY |
creation day |
| IDAT1(7) |
NYEAR |
creation year |
| IDAT1(8) |
NHOUR |
creation hour |
| IDAT1(9) |
NMINUT |
creation minute |
| IDAT1(10) |
NSEC |
creation second
|
| IDAT1(11) |
NPIX2 |
image size in BYTES as seen from the program
(IDAT1(13)*IDAT1(89))
|
| IDAT1(12) |
NPIXEL |
total number of image elements |
| IDAT1(13) |
IXLP |
number of lines per image (for 1D data IYLP1=1) |
| IDAT1(14) |
IYLP |
number of pixels per line
|
| IDAT1(15) |
TYPE |
4 characters determining the image type
REAL : REAL/float
INTG : INTEGER*2/short
PACK : PACK/byte
COMP : 2 REAL / 2 float
RECO : complex format with 0 in imaginary part)
|
| IDAT1(16) |
IXOLD |
top left X co-ordinate before CUT-IMAGE (boxing) |
| IDAT1(17) |
IYOLD |
top left Y co-ordinate before CUT-IMAGE (boxing)
|
| DAT1(18) |
AVDENS |
average density in image |
| DAT1(19) |
SIGMA |
standard deviation of densities |
| DAT1(20) |
VARIAN |
variance of densities in image |
| DAT1(21) |
OLDAVD |
old average density of this image |
| DAT1(22) |
DENSMAX |
highest density in image |
| DAT1(23) |
DENSMIN |
minimal density in image
|
| IDAT1(24) |
COMPLEX |
label indicating that data is always complex
|
| DAT1(25) |
CXLENGTH |
cell dimension in Angstr. (x-direction) (MRC(12)) |
| DAT1(26) |
CYLENGTH |
cell dimension in Angstr. (y-direction) (MRC(11)) |
| DAT1(27) |
CZLENGTH |
cell dimension in Angstr. (z-direction) (MRC(13)) |
| DAT1(28) |
CALPHA |
cell angle alpha (MRC(14)) |
| DAT1(29) |
CBETA |
cell angle beta (MRC(15)) |
IDAT1(30)
- IDAT1(49) |
NAME |
coded NAME/TITLE of the image (80 characters)
|
| DAT1(50) |
CGAMMA |
cell angle gamma (MRC(16))
|
| IDAT1(51) |
MAPC |
axis corresponding to columns (MRC(17))
(1,2,3 for X,Y,Z) |
| IDAT1(52) |
MAPR |
axis corresponding to rows (MRC(18))
(1,2,3 for X,Y,Z) |
| IDAT1(53) |
MAPS |
axis corresponding to sections (MRC(19))
(1,2,3 for X,Y,Z) |
| IDAT1(54) |
ISPG |
space group (MRC(23)) |
| IDAT1(55) |
NXSTART |
number of 1st column in map (def:0) (MRC(6))
(where map starts in columns) |
| IDAT1(56) |
NYSTART |
number of 1st row in map (def:0) (MRC(5))
(where map starts in rows) |
| IDAT1(57) |
NZSTART |
number of 1st section in map (def:0) (MRC(7))
(where map starts in sections) |
| IDAT1(58) |
NXINTV |
number of intervals along X (MRC(9)) |
| IDAT1(59) |
NYINTV |
number of intervals along Y (MRC(8)) |
| IDAT1(60) |
NZINTV |
number of intervals along Z (MRC(10))
|
| IDAT1(61) |
IZLP |
number of 2D planes in 3D data (for 2D: IZLP1=1) |
| IDAT1(62) |
I4LP |
number of 3D planes in 4D data (for 2D: I4LP1=1) |
| IDAT1(63) |
I5LP |
|
| IDAT1(64) |
I6LP |
|
| DAT1(65) |
ALPHA |
Euler angle alpha (3D and Angular Reconst.) |
| DAT1(66) |
BETA |
Euler angle beta (3D and Angular Reconst.) |
| DAT1(67) |
GAMMA |
Euler angle gamma (3D and Angular Reconst.) |
| IDAT1(68) |
IMAVERS |
IMAGIC-5 version used (yyyymmdd)
|
| IDAT1(69) |
REALTYPE |
floating point type, machine stamp
16777216 for VAX/VMS
33686018 for DEC/OSF,ULTRIX, LINUX, MS Windows
67372036 for SiliconGraphics, SUN, HP, IBM
|
IDAT1(70)
- IDAT1(98) |
|
Variables that control the buffering
during read/write in IMAGIC-5 programs.
PLEASE DO NOT TOUCH !
|
| IDAT1(99) |
RONLY |
flag in calling program to open file readonly
(1: readonly)
|
| DAT1(100) |
ANGLE |
last rotation angle |
| DAT1(101) |
RCP |
rotational correlation peak |
| IDAT1(102) |
IXPEAK |
shift correlation peak in X direction |
| IDAT1(103) |
IYPEAK |
shift correlation peak in Y direction |
| DAT1(104) |
CCC |
cross correlation peak hight |
| DAT1(105) |
ERRAR |
error in angular reconstitution
if -1.0: the file is a special file (FABOSA)
|
| DAT1(106) |
ERR3D |
error in 3D reconstruction (TRUE-THREED) |
| IDAT1(107) |
REF |
(multi-) reference number |
| DAT1(108) |
CLASSNO |
class number in classification |
| DAT1(109) |
LOCOLD |
location number before CUT-IMAGE (boxing)
or copy in ANGULAR and EX-COPY
|
| DAT1(110) |
OLDAVD |
old average density
(before NORM-VARIANCE, for example)
|
| DAT1(111) |
OLDSIGMA |
old sigma |
| DAT1(112) |
XSHIFT |
last shift in X direction |
| DAT1(113) |
YSHIFT |
last shift in Y direction |
| DAT1(114) |
NUMCLS |
number of class members
|
| DAT1(115) |
OVQUAL |
overall class quality
if the image is a class average
|
| DAT1(116) |
EANGLE |
equivalent angle |
| DAT1(117) |
EXSHIFT |
equivalent shift in X direction |
| DAT1(118) |
EYSHIFT |
equivalent shift in Y direction |
| DAT1(119) |
CMTOTVAR |
used in MSA/IMAGECOOS |
| DAT1(120) |
INFORMAT |
Gauss norm / real*FT Space information of the data set |
| IDAT1(121) |
NUMEIGEN |
number of eigen values in MSA |
| IDAT1(122) |
NIACTIVE |
number of active images in MSA |
| DAT1(123) |
RESOLX |
Angstrom per pixel/voxel in X direction
if DAT1(105) = -1.0 (FABOSA): mm per pixel
|
| DAT1(124) |
RESOLY |
Angstrom per pixel/voxel in Y direction |
| DAT1(125) |
RESOLZ |
Angstrom per pixel/voxel in Z direction |
| DAT1(126) |
ALPHA2 |
Euler angle alpha (from projection mapping) |
| DAT1(127) |
BETA2 |
Euler angle beta (from projection mapping) |
|
| DAT1(128) |
GAMMA2 |
Euler angle gamma (from projection mapping) |
DAT1(126)
- DAT1(128) |
|
Special FABOSA variables if DAT1(105) = -1.0 |
| DAT1(129) |
NMETRIC |
Metric used in MSA calculations |
| DAT1(130) |
ACTMSA |
a flag indicating whether the "image" is
active or not. Used during MSA calculations
|
DAT1(131)
- DAT1(199) |
COOSMSA |
co-ordinates of "image" along factorial axis
number 1 through 69 (maximum possible).
Used during MSA calculations.
|
| DAT1(150) |
EIGVAL |
eigenvalues if the "images" represent
eigenimages (eigenvalue #1 into loc#1 etc.)
|
IDAT1(200)
- IDAT1(256) |
HISTORY |
coded history of image (228 characters) |
A file with the default extension .img can be loaded by just double clicking on the file in the open file dialog box. Files with
another extension, which are in an imagic format, can be loaded by right clicking on the file in the dialog box and
choosing Format from the popup menu. In the file format chooser select "Imagic Format" and press OK. Press the Open Button in the open
file dialog box. Make sure that you have also a .hed file with the same name. Otherwise the corresponding header could not be found
and the file will not be loaded.
