Beltrao GroupPublications
(*equal contribution, ^corresponding author)
Beltrao P^, Albanèse V, Kenner LR, Swaney DL, Burlingame AL, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ^ “Systematic Functional Prioritization of Protein Post-translational Modifications” 2012 Cell 150 (2), 413-425
Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman JI, Jiang L, Kuo D, Tosti E, Kim H, Edelmann W, Keogh M, Greene D, Tang C,, Cunningham P, Shokat KM, Cagney G, Svensson P, Guthrie C, Espenshade PJ, Ideker T and Krogan NJ^ “Hierarchical modularity and the evolution of genetic interactomes across Species” 2012 Molecular Cell 46 (5), 691-704
Beltrao P, Ryan CJ, and Krogan NJ^ “Comparative Interaction Networks: Bridging Genotype to Phenotype” 2012 Evolutionary Systems Biology, Advances in Experimental Medicine and Biology, 139-156
Charles G, Chen C, Shih S, Collins S, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan N, Madhani H, and Narlika^ G. A site-specific acetylation mark on the essential RSC chromatin remodeling complex promotes resistance to replication stress. 2011 PNAS 108(26):10620-5
Nichols RJ, Sen S, Choo YJ, Beltrao P, Zietek M, Chaba R, Lee S, Kazmierczak K, Lee K, Wong A, Shales M, Lovett S, Winkler M, Krogan NJ, Typas A, Gross CA^ “Phenotypic Landscape of a Bacterial Cell” 2011 Cell 144(1):143-56
Lefebvre C, Rajbhandari P, Alvarez MJ, Bandaru P, Lim WK, Sato M, Wang K, Sumazin P, Kustagi M, Bisikirska BC, Basso K, Beltrao P, Krogan N, Gautier J, Dalla-Favera R, Califano A^ “A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers” 2010 Mol Syst Biol. 6:377.
Kapitzky L*, Beltrao P*, Berens TJ, Gassner N, Zhou C, Wüster A, Wu J, Babu M, Elledge SJ,Toczyski D,Lokey RS, Krogan NJ^ “Cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action” 2010 Mol Syst Biol. 6:451
Beltrao P, Cagney C, Krogan NJ^ “Quantitative Genetic Interactions Reveal Layers of Biological Modularity” 2010 Cell 141(5):739-45
Beltrao P^, Trinidad JC, Fiedler D, Roguev A, Lim WA, Shokat KM, Burlingame AL, Krogan NJ^ “Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species” 2010 PLoS Biol. 7(6):e1000134
Encinar JA, Fernandez-Ballester G, Sánchez IE, Hurtado-Gomez E, Stricher F, Beltrao P, Serrano L.^ “ADAN: a database for prediction of protein-protein interaction of modular domains mediated by linear motifs” 2009 Bioinformatics. 25(18):2418-24
Fernandez-Ballester G, Beltrao P, Gonzalez JM, Song YH, Wilmanns M, Valencia A, Serrano L.^ “Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions” 2009 J Mol Biol. 388(4):902-16.
Saunders N, Beltrao P, Jensen L, Jurczak D, Krause R, Kuhn M, Wu S. “Microblogging the ISMB: a new approach to conference reporting” 2009 PLoS Comput Biol. 5(1):e1000263
Sánchez IE*, Beltrao P*, Stricher F, Schymkowitz J, Ferkinghoff-Borg J, Rousseau F, Serrano L^ “Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm” 2008 PLoS Comput Biol. 4(4):e1000052.
Isalan M, Lemerle C, Michalodimitrakis K, Horn C, Beltrao P, Raineri E, Serrano L^. “Evolvability and hierarchy in rewired bacterial gene networks” 2008 Nature. 452(7189):840-5.
Kiel C, Beltrao P, Serrano L.^ "Deciphering Protein Interaction Networks using Structural Information" 2008 Annual Review of Biochemistry, Volume 77 3.
Kiel C, Foglierini M, Kuemmerer N, Beltrao P, Serrano L^. “A genome-wide Ras-effector interaction network” 2007 J Mol Biol. 370(5):1020-32.
Beltrao P, Kiel C, Serrano L^. “Structures in Systems Biology” 2007 Curr Opin Struct Biol. 17(3):378-84
Beltrao P^ & Serrano L “Specificity and Evolvability in Eukaryotic Protein Interaction Networks" 2007 PLoS Comput Biol 3(2): e25
Beltrao P^ & Serrano L “Comparative genomics and disorder prediction identify biologically relevant SH3 protein interactions" 2005 PLoS Comp Biol, 1(3): e26.
Ander M, Beltrao P, Di Ventura B, Ferkinghoff-Borg J, Foglierini M, Kaplan A, Lemerle C, Tomas-Oliveira I, Serrano L^ “SmartCell: a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple gene networks.” 2004 Syst. Biol. 1, pp. 129-138.
Massey SE, Moura G, Beltrao P, Almeida R, Garey JR, Tuite MF, Santos MA^ “Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon in Candida spp” 2003 Genome Research 13(4):544-57 2.