Protein Expression and Purification Core FacilityLinks

Analytical Ultracentrifugation

Codon Usage

Company Links

Protocols

Databases

Analytical Ultracentrifugation

Beckman-Coulter
The Center to Advance Molecular Interaction Sciences - University of New Hampshire (USA)
Center for Analytical Ultracentrifugation of Macromolecular Assemblies - University of Texas (USA)
National Analytical Ultracentrifugation Facility - University of Connecticut Biotechnology Center
National Centre for Macromolecular Hydrodynamics - (NCMH), University of Nottingham (UK)
Reversible Associations in Structural and Molecular Biology - (RASMB)
John Philo's Software Home Page
Ultrascan II home page
Ultraspin welcome page
Sedfit home page

Codon Usage

Codon Usage Database
Graphical Codon Usage Analyser

Company Links

GE Healthcare
Bio-Rad
Clontech
Invitrogen
Life Technologies
MBI Fermentas
New England Biolabs
Novagen
Promega
Qiagen
Roche Applied Science
Stratagene

Protocols

DoubleTwist
Highveld.com
Labvelocity
Practical Molecular Biology

Databases

CiteXplore (Citation database at the EBI)

EcoCyc_ E. coli Genes and Metabolism

Coli Genetic Stock Center

PDB-Protein Data Bank

PDBsum

KEGG (Kyoto Encyclopedia of Genes and Genomes)

Molecular Biology databases (Large collection of links to medical and biological databases, German & English)

National Center for Genome Resources

ProNIT: Database for Protein-Nucleic Acid Interactions

SCOP_ Structural Classification of Proteins

TIGR Microbial Database

Rabbit (Oryctolagus cuniculus)

ZebraFIsh BLAST

PepcDB

PepcDB, Protein Expression Purification and Crystallization DataBase, is a database of experimental protocols and detailed experimental history of Structural Genomics targets

Insect Cells Omics

Antibody Resource Page

Links to antibody suppliers, educational websites, custom/contract monoclonal and polyclonal Ab producers, an antibody gallery, etc.

AntibodypediA

Human Protein Atlas

Domain analysis

EBI Databases

ExPASy - PROSITE

NCBI Conserved Domain DB

Pfam Search DNA vs. Pfam

SMART

ProDom database

TMHMM server

DomainFinder

Biozon : Domain Prediction

Helical Wheel

AntigenicityPlot

ANTIGENIC PEPTIDES

Bioinformatics, Molecular Immunology Foundation

PEPOP predict antigenic peptides

BCEPRED Bcell epitope pred.

B- cell epitope prediction using physico-chemical properties.

BCPREDS: epitope prediction

SignalP 3.0

ELM - Functional Sites in Proteins

ELM is a resource for predicting functional sites (described by linear motifs) in eukarytic proteins

NetPhos 2.0 Server

Protein properties predictor

PeptideMass

SWISS-MODEL

AbDesigner

Nucleic acids tools

Nucleic acid sequence analysis
ExPASy Molecular Biology Server
In silico PCR amplification
Primer3
Primer3Plus
Synthetic Gene Designer
pET Vector Table
RNA Package
ORF Finder
Pfold server_RNA

Other resource

ABIM Online analysis tools
BLAST at NCBI
ESyPred3D submitting form
ExPASy - ProtParam tool
GeneDesign β2.0
iPath: Interactive Pathways
Molecular Biology and Biochemistry Software
OligoRep
PHYRE
Pro-origami: Protein Structure Cartoons
Protein Calculator
PSORT-sorting signals
REBASE
RosettaDock
RosettaDock protein-protein docking server based on Rosetta engine
Trilogy Structure Prediction
WatCut (identify silent mutations for introducing restriction sites in primers)
Reverse Translate
SGC | Protein Production Protocols