EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Publications

Total: 31 publication(s)

2014

Rutkowska A, Plass T, Hoffmann JE, Yushchenko DA, Feng S, Schultz C. (2014)

T-CrAsH: A Heterologous Chemical Crosslinker

Chembiochem 15(12):1765-1768. doi:10.1002/cbic.201402189
Europe PMC | doi


2013

Yushchenko DA, Schultz C. (2013)

Tissue clearing for optical anatomy

Angew. Chem. Int. Ed. Engl. 52(42):10949-10951. doi:10.1002/anie.201306039
Europe PMC | doi


2012

Yushchenko DA, Zhang M, Yan Q, Waggoner AS, Bruchez MP. (2012)

Genetically targetable and color-switching fluorescent probe.

Chembiochem 13(11):1564-1568. doi:10.1002/cbic.201200334
Europe PMC | doi

Fauerbach JA, Yushchenko DA, Shahmoradian SH, Chiu W, Jovin TM, Jares-Erijman EA. (2012)

Supramolecular Non-Amyloid Intermediates in the Early Stages of alpha-Synuclein Aggregation

BIOPHYS J 102:1127-1136. doi:10.1016/j.bpj.2012.01.051
doi

Amin F, Yushchenko DA, Montenegro JM, Parak WJ. (2012)

Integration of organic fluorophores in the surface of polymer-coated colloidal nanoparticles for sensing the local polarity of the environment.

Chemphyschem 13(4):1030-1035. doi:10.1002/cphc.201100901
Europe PMC | doi

Fauerbach JA, Yushchenko DA, Shahmoradian SH, Chiu W, Jovin TM, Jares-Erijman EA. (2012)

Supramolecular non-amyloid intermediates in the early stages of α-synuclein aggregation.

Biophys. J. 102(5):1127-1136. doi:10.1016/j.bpj.2012.01.051
Europe PMC | doi

Shvadchak VV, Falomir-Lockhart LJ, Yushchenko DA, Mely Y, Jovin TM. (2012)

Comparison of alpha-Synuclein and Amyloid Beta Membrane Interactions

BIOPHYS J 102:11A.


2011

Shvadchak VV, Yushchenko DA, Pievo R, Jovin TM. (2011)

The mode of alpha-synuclein binding to membranes depends on lipid composition and lipid to protein ratio

FEBS LETT 585:3513-3519. doi:10.1016/j.febslet.2011.10.006
doi

Shvadchak VV, Yushchenko DA, Pievo R, Jovin TM. (2011)

The mode of α-synuclein binding to membranes depends on lipid composition and lipid to protein ratio.

FEBS Lett. 585(22):3513-3519. doi:10.1016/j.febslet.2011.10.006
Europe PMC | doi

Shvadchak VV, Falomir-Lockhart LJ, Yushchenko DA, Jovin TM. (2011)

Specificity and kinetics of alpha-synuclein binding to model membranes determined with fluorescent excited state intramolecular proton transfer (ESIPT) probe.

J. Biol. Chem. 286(15):13023-13032. doi:10.1074/jbc.m110.204776
Europe PMC | doi


2010

Tomin VI, Jaworski R, Yushchenko DA. (2010)

Spectral properties of molecular charge-transfer probe QMOM

OPT SPECTROSC+ 109:336-341. doi:10.1134/S0030400X10090043
doi

Yushchenko DA, Fauerbach JA, Thirunavukkuarasu S, Jares-Erijman EA, Jovin TM. (2010)

Fluorescent ratiometric MFC probe sensitive to early stages of alpha-synuclein aggregation.

J. Am. Chem. Soc. 132(23):7860-7861. doi:10.1021/ja102838n
Europe PMC | doi

Kucherak OA, Oncul S, Darwich Z, Yushchenko DA, Arntz Y, Didier P, Mély Y, Klymchenko AS. (2010)

Switchable nile red-based probe for cholesterol and lipid order at the outer leaflet of biomembranes.

J. Am. Chem. Soc. 132(13):4907-4916. doi:10.1021/ja100351w
Europe PMC | doi

Fauerbach J, Yushchenko D, Demchenko A, Jovin TM, Jares-Erijman EA. (2010)

Characterization of Alpha-Synuclein Early Aggregates by Atomic Force Microscopy

BIOPHYS J 98:253A.

Shvadchak VV, Yushchenko DA, Jovin TM. (2010)

Ratiometric Fluorescent ESIPT Probe Characterizes Binding of Alpha-Synuclein to Membranes

BIOPHYS J 98:483A.

Yushchenko DA, Fauerbach JA, Demchenko AP, Jares-Erijman E, Jovin TM. (2010)

New Fluorescent Probe for Continuous Monitoring of Alpha-Synuclein Aggregation

BIOPHYS J 98:252A-253A.


2009

Bilokin MD, Shvadchak VV, Yushchenko DA, Klymchenko AS, Duportail G, Mely Y, Pivovarenko VG. (2009)

3-Hydroxybenzo[g]quinolones: dyes with red-shifted absorption and highly resolved dual emission

TETRAHEDRON LETT 50:4714-4719. doi:10.1016/j.tetlet.2009.06.024
doi

Bilokin' MD, Shvadchak VV, Yushchenko DA, Duportail G, Mély Y, Pivovarenko VG. (2009)

Dual-fluorescence probe of environment basicity (hydrogen bond accepting ability) displaying no sensitivity to polarity.

J Fluoresc 19(3):545-553. doi:10.1007/s10895-008-0443-x
Europe PMC | doi


2008

Enander K, Choulier L, Olsson AL, Yushchenko DA, Kanmert D, Klymchenko AS, Demchenko AP, Mély Y, Altschuh D. (2008)

A peptide-based, ratiometric biosensor construct for direct fluorescence detection of a protein analyte.

Bioconjug. Chem. 19(9):1864-1870. doi:10.1021/bc800159d
Europe PMC | doi

Klymchenko AS, Shvadchak VV, Yushchenko DA, Jain N, Mély Y. (2008)

Excited-state intramolecular proton transfer distinguishes microenvironments in single- and double-stranded DNA.

J Phys Chem B 112(38):12050-12055. doi:10.1021/jp8058068
Europe PMC | doi


2007

Klymchenko AS, Yushchenko DA, Mely Y. (2007)

Tuning excited state intramolecular proton transfer in 3-hydroxyflavone derivative by reaction of its isothiocyanate group with an amine

J PHOTOCH PHOTOBIO A 192:93-97. doi:10.1016/j.jphotochem.2007.05.009
doi

Kovtunenko VA, Kucherenko TT, Zubatyk RI, Shishkin OV, Yushchenko DA. (2007)

Derivatives of arborine [1-methyl-2-(phenyl-methyl)-4(1H)-quinazolinone]

KHIM GETEROTSIKL+ 1532-1538.

Yushchenko DA, Shvadchak VV, Klymchenko AS, Duportail G, Pivovarenko VG, Mély Y. (2007)

Modulation of excited-state intramolecular proton transfer by viscosity in protic media.

J Phys Chem A 111(42):10435-10438. doi:10.1021/jp074726u
Europe PMC | doi

Yushchenko DA, Vadzyuk OB, Kosterin SO, Duportail G, Mély Y, Pivovarenko VG. (2007)

Sensing of adenosine-5'-triphosphate anion in aqueous solutions and mitochondria by a fluorescent 3-hydroxyflavone dye.

Anal. Biochem. 369(2):218-225. doi:10.1016/j.ab.2007.05.005
Europe PMC | doi

Yushchenko DA, Shvadchak VV, Klymchenko AS, Duportail G, Pivovarenko VG, Mély Y. (2007)

Steric control of the excited-state intramolecular proton transfer in 3-hydroxyquinolones: steady-state and time-resolved fluorescence study.

J Phys Chem A 111(37):8986-8992. doi:10.1021/jp071075t
Europe PMC | doi

M'Baye G, Klymchenko AS, Yushchenko DA, Shvadchak VV, Ozturk T, Mély Y, Duportail G. (2007)

Fluorescent dyes undergoing intramolecular proton transfer with improved sensitivity to surface charge in lipid bilayers.

Photochem. Photobiol. Sci. 6(1):71-76. doi:10.1039/b611699j
Europe PMC | doi


2006

Yushchenko DA, Shvadchak VV, Bilokin' MD, Klymchenko AS, Duportail G, Mély Y, Pivovarenko VG. (2006)

Modulation of dual fluorescence in a 3-hydroxyquinolone dye by perturbation of its intramolecular proton transfer with solvent polarity and basicity.

Photochem. Photobiol. Sci. 5(11):1038-1044. doi:10.1039/b610054f
Europe PMC | doi

Yushchenko DA, Bilokin' MD, Pyvovarenko OV, Duportail G, Mely Y, Pivovarenko VG. (2006)

Synthesis and fluorescence properties of 2-aryl-3-hydroxyquinolones, a new class of dyes displaying dual fluorescence

TETRAHEDRON LETT 47:905-908. doi:10.1016/j.tetlet.2005.11.160
doi

Yushchenko DA, Shvadchak VV, Klymchenko AS, Duportail G, Mely Y, Pivovarenko VG. (2006)

2-Aryl-3-hydroxyquinolones, a new class of dyes with solvent dependent dual emission due to excited state intramolecular proton transfer

NEW J CHEM 30:774-781. doi:10.1039/b601400c
doi


2005

Kachkovski OD, Yushchenko DA, Kachkovski GO, Shut DM. (2005)

Electronic properties of polymethine systems 8: geometry and electron structure of radicals

DYES PIGMENTS 66:211-221. doi:10.1016/j.dyepig.2004.06.020
doi

Kachkovski OD, Yushchenko DA, Kachkovski GO, Pilipchuk NV. (2005)

Electronic properties of polymethine systems 9: position of soliton level in charged molecules

DYES PIGMENTS 66:223-229. doi:10.1016/j.dyepig.2004.06.019
doi