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Publications

Total: 8 publication(s)

2015

Murn J, Zarnack K, Yang YJ, Durak O, Murphy EA, Cheloufi S, Gonzalez DM, Teplova M, Curk T, Zuber J, Patel DJ, Ule J, Luscombe NM, Tsai LH, Walsh CA, Shi Y. (2015)

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt.

Genes Dev. 29(5):501-512. doi:10.1101/gad.258483.115
Europe PMC | doi


2013

Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J. (2013)

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

Cell 152(3):453-466. doi:10.1016/j.cell.2012.12.023
Europe PMC | doi


2011

Tollervey JR, Wang Z, Hortobágyi T, Witten JT, Zarnack K, Kayikci M, Clark TA, Schweitzer AC, Rot G, Curk T, Zupan B, Rogelj B, Shaw CE, Ule J. (2011)

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain

Genome Res. 21(10):1572-1582. doi:10.1101/gr.122226.111
Europe PMC | doi

König J, Zarnack K, Luscombe NM, Ule J. (2011)

Protein-RNA interactions: new genomic technologies and perspectives

Nat. Rev. Genet. 13(2):77-83. doi:10.1038/nrg3141
Europe PMC | doi

Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. (2011)

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution

J Vis Exp (50):167-174. doi:10.3791/2638
Europe PMC | doi


2010

König J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. (2010)

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

Nat. Struct. Mol. Biol. 17(7):909-915. doi:10.1038/nsmb.1838
Europe PMC | doi

Zarnack K, Feldbrügge M. (2010)

Microtubule-dependent mRNA transport in fungi

Eukaryotic Cell 9(7):982-990. doi:10.1128/ec.00030-10
Europe PMC | doi

Wang Z, Kayikci M, Briese M, Zarnack K, Luscombe NM, Rot G, Zupan B, Curk T, Ule J. (2010)

iCLIP predicts the dual splicing effects of TIA-RNA interactions

PLoS Biol. 8(10):e1000530. doi:10.1371/journal.pbio.1000530
Europe PMC | doi