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Staff at EMBL

CP-60002771

Charles Girardot

Head of Genome Biology Computational Support

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 13 publication(s)

2014

Ciglar L, Girardot C, Wilczyński B, Braun M, Furlong EE. (2014)
Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis
Development 141(13):2633-2643. doi:10.1242/dev.101956
Europe PMC | doi

Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. (2014)
A conserved role for Snail as a potentiator of active transcription
Genes Dev. 28(2):167-181. doi:10.1101/gad.230953.113
Europe PMC | doi

Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. (2014)
Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity
PLoS Genet. 10(1):e1004060. doi:10.1371/journal.pgen.1004060
Europe PMC | doi


2012

Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. (2012)
A transcription factor collective defines cardiac cell fate and reflects lineage history
Cell 148(3):473-486. doi:10.1016/j.cell.2012.01.030
Europe PMC | doi

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. (2012)
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
Nat. Genet. 44(2):148-156. doi:10.1038/ng.1064
Europe PMC | doi

Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E. (2012)
Analysis of variation at transcription factor binding sites in Drosophila and humans
Genome Biol. 13(9):R49. doi:10.1186/gb-2012-13-9-r49
Europe PMC | doi


2010

Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M. (2010)
Model-based method for transcription factor target identification with limited data
Proc. Natl. Acad. Sci. U.S.A. 107(17):7793-7798. doi:10.1073/pnas.0914285107
Europe PMC | doi


2009

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. (2009)
Combinatorial binding predicts spatio-temporal cis-regulatory activity
Nature 462(7269):65-70. doi:10.1038/nature08531
Europe PMC | doi


2008

Oktaba K, Gutiérrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Müller J. (2008)
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila
Dev. Cell 15(6):877-889. doi:10.1016/j.devcel.2008.10.005
Europe PMC | doi

Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. (2008)
4DXpress: a database for cross-species expression pattern comparisons
Nucleic Acids Res. 36(Database issue):D847-53. doi:10.1093/nar/gkm797
Europe PMC | doi


2007

Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE. (2007)
CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data
Bioinformatics 23(6):771-773. doi:10.1093/bioinformatics/btl641
Europe PMC | doi

Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. (2007)
A core transcriptional network for early mesoderm development in Drosophila melanogaster
Genes Dev. 21(4):436-449. doi:10.1101/gad.1509007
Europe PMC | doi


2002

Motz M, Kober I, Girardot C, Loeser E, Bauer U, Albers M, Moeckel G, Minch E, Voss H, Kilger C, Koegl M. (2002)
Elucidation of an archaeal replication protein network to generate enhanced PCR enzymes
J. Biol. Chem. 277(18):16179-16188. doi:10.1074/jbc.m107793200
Europe PMC | doi