Staff at EMBL

Simon Anders

Research Scientist
Huber Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

Publications

An efficient method for genome-wide polyadenylation site mapping and RNA quantification. Wilkening, S., Pelechano, V., Jarvelin, A.I., Tekkedil, M.M., Anders, S., Benes, V. & Steinmetz, L.M. Nucleic Acids Res. 2013 Mar 1;41(5):e65. doi: 10.1093/nar/gks1249. Epub 2013 Jan7. PubMed

Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements. Zarnack, K., Konig, J., Tajnik, M., Martincorena, I., Eustermann, S., Stevant, I., Reyes, A., Anders, S., Luscombe, N.M. & Ule, J. Cell. 2013 Jan 31;152(3):453-66. doi: 10.1016/j.cell.2012.12.023. PubMed

Detecting differential usage of exons from RNA-seq data. Anders, S., Reyes, A. & Huber, W. Genome Res. 2012 Oct;22(10):2008-17. doi: 10.1101/gr.133744.111. Epub 2012 Jun21. PubMed

Relating CNVs to transcriptome data at fine resolution: Assessment of the effect of variant size, type, and overlap with functional regions. Schlattl, A., Anders, S., Waszak, S.M., Huber, W. & Korbel, J.O. Genome Res. 2011 Dec;21(12):2004-13. Epub 2011 Aug 23. PubMed

Differential expression analysis for sequence count data. Anders, S. & Huber, W. Genome Biol. 2010 Oct 27;11(10):R106. PubMed

Genome-wide analysis of mRNA decay patterns during early Drosophila development. Thomsen, S., Anders, S., Janga, S.C., Huber, W. & Alonso, C.R. Genome Biol. 2010;11(9):R93. Epub 2010 Sep 21. PubMed

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Morgan, M., Anders, S., Lawrence, M., Aboyoun, P., Pages, H. & Gentleman, R. Bioinformatics. 2009 Oct 1;25(19):2607-8. Epub 2009 Aug 3. PubMed

Visualization of genomic data with the Hilbert curve. Anders, S. Bioinformatics. 2009 May 15;25(10):1231-5. Epub 2009 Mar 17. PubMed

A variational method based on weighted graph states Anders S, Briegel HJ, Dür W New Journal of Physics. 2007;9(10):361-361 Link

Classical simulation of quantum systems Anders S PhD Thesis. University of Innsbruck. 2007 Link

Ground-state approximation for strongly interacting spin systems in arbitrary spatial dimension. Anders, S., Plenio, M.B., Dur, W., Verstraete, F. & Briegel, H.J. Phys Rev Lett. 2006 Sep 8;97(10):107206. Epub 2006 Sep 8. PubMed

Quantum communication cost of preparing multipartite entanglement Kruszynska C, Anders S, Dür W, Briegel H. Physical Review A. 2006;73(6) Link

Fast simulation of stabilizer circuits using a graph-state representation Anders S, Briegel H. Physical Review A. 2006;73(2) Link