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Staff at EMBL

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Publications

Total: 14 publication(s)

2014

Laufer C, Fischer B, Huber W, Boutros M. (2014)
Measuring genetic interactions in human cells by RNAi and imaging
Nat Protoc 9(10):2341-2353. doi:10.1038/nprot.2014.160
Europe PMC | doi

Pyl PT, Gehring J, Fischer B, Huber W. (2014)
h5vc: Scalable nucleotide tallies with HDF5
Bioinformatics 30(10):1464-1466. doi:10.1093/bioinformatics/btu026
Europe PMC | doi


2013

Kwon SC, Yi H, Eichelbaum K, Föhr S, Fischer B, You KT, Castello A, Krijgsveld J, Hentze MW, Kim VN. (2013)
The RNA-binding protein repertoire of embryonic stem cells
Nat. Struct. Mol. Biol. 20(9):1122-1130. doi:10.1038/nsmb.2638
Europe PMC | doi

Sommer C, Held M, Fischer B, Huber W, Gerlich DW. (2013)
CellH5: a format for data exchange in high-content screening
Bioinformatics 29(12):1580-1582. doi:10.1093/bioinformatics/btt175
Europe PMC | doi

Laufer C, Fischer B, Billmann M, Huber W, Boutros M. (2013)
Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
Nat. Methods 10(5):427-431. doi:10.1038/nmeth.2436
Europe PMC | doi

Okawa S, Fischer B, Krijgsveld J. (2013)
Properties of isotope patterns and their utility for peptide identification in large-scale proteomic experiments
Rapid Commun. Mass Spectrom. 27(9):1067-1075. doi:10.1002/rcm.6551
Europe PMC | doi

Castello A, Fischer B, Hentze MW, Preiss T. (2013)
RNA-binding proteins in Mendelian disease
Trends Genet. 29(5):318-327. doi:10.1016/j.tig.2013.01.004
Europe PMC | doi

Castello A, Horos R, Strein C, Fischer B, Eichelbaum K, Steinmetz LM, Krijgsveld J, Hentze MW. (2013)
System-wide identification of RNA-binding proteins by interactome capture
Nat Protoc 8(3):491-500. doi:10.1038/nprot.2013.020
Europe PMC | doi


2012

Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P. (2012)
A cross-platform toolkit for mass spectrometry and proteomics
Nat. Biotechnol. 30(10):918-920. doi:10.1038/nbt.2377
Europe PMC | doi

Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW. (2012)
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
Cell 149(6):1393-1406. doi:10.1016/j.cell.2012.04.031
Europe PMC | doi


2011

Horn T, Sandmann T, Fischer B, Axelsson E, Huber W, Boutros M. (2011)
Mapping of signaling networks through synthetic genetic interaction analysis by RNAi
Nat. Methods 8(4):341-346. doi:10.1038/nmeth.1581
Europe PMC | doi

Axelsson E, Sandmann T, Horn T, Boutros M, Huber W, Fischer B. (2011)
Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi
BMC Bioinformatics 12:342. doi:10.1186/1471-2105-12-342
Europe PMC | doi


2010

Held M, Schmitz MH, Fischer B, Walter T, Neumann B, Olma MH, Peter M, Ellenberg J, Gerlich DW. (2010)
CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging
Nat. Methods 7(9):747-754. doi:10.1038/nmeth.1486
Europe PMC | doi

Kaynig V, Fischer B, Müller E, Buhmann JM. (2010)
Fully automatic stitching and distortion correction of transmission electron microscope images
J. Struct. Biol. 171(2):163-173. doi:10.1016/j.jsb.2010.04.012
Europe PMC | doi