Total: 18 publication(s)


Beckmann BM, Horos R, Fischer B, Castello A, Eichelbaum K, Alleaume AM, Schwarzl T, Curk T, Foehr S, Huber W, Krijgsveld J, Hentze MW. (2015)

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs.

Nat Commun 6 doi:10.1038/ncomms10127
Europe PMC | doi

Gehring JS, Fischer B, Lawrence M, Huber W. (2015)

SomaticSignatures: Inferring Mutational Signatures from Single Nucleotide Variants.

Bioinformatics doi:10.1093/bioinformatics/btv408
Europe PMC | doi

Fischer B, Sandmann T, Horn T, Billmann M, Chaudhary V, Huber W, Boutros M. (2015)

A map of directional genetic interactions in a metazoan cell.

Elife 4 doi:10.7554/elife.05464
Europe PMC | doi


Khmelinskii A, Blaszczak E, Pantazopoulou M, Fischer B, Omnus DJ, Le Dez G, Brossard A, Gunnarsson A, Barry JD, Meurer M, Kirrmaier D, Boone C, Huber W, Rabut G, Ljungdahl PO, Knop M. (2014)

Protein quality control at the inner nuclear membrane.

Nature 516(7531):410-413. doi:10.1038/nature14096
Europe PMC | doi

Laufer C, Fischer B, Huber W, Boutros M. (2014)

Measuring genetic interactions in human cells by RNAi and imaging

Nat Protoc 9(10):2341-2353. doi:10.1038/nprot.2014.160
Europe PMC | doi

Pyl PT, Gehring J, Fischer B, Huber W. (2014)

h5vc: Scalable nucleotide tallies with HDF5

Bioinformatics 30(10):1464-1466. doi:10.1093/bioinformatics/btu026
Europe PMC | doi


Kwon SC, Yi H, Eichelbaum K, Föhr S, Fischer B, You KT, Castello A, Krijgsveld J, Hentze MW, Kim VN. (2013)

The RNA-binding protein repertoire of embryonic stem cells

Nat. Struct. Mol. Biol. 20(9):1122-1130. doi:10.1038/nsmb.2638
Europe PMC | doi

Sommer C, Held M, Fischer B, Huber W, Gerlich DW. (2013)

CellH5: a format for data exchange in high-content screening

Bioinformatics 29(12):1580-1582. doi:10.1093/bioinformatics/btt175
Europe PMC | doi

Castello A, Fischer B, Hentze MW, Preiss T. (2013)

RNA-binding proteins in Mendelian disease

Trends Genet. 29(5):318-327. doi:10.1016/j.tig.2013.01.004
Europe PMC | doi

Laufer C, Fischer B, Billmann M, Huber W, Boutros M. (2013)

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Nat. Methods 10(5):427-431. doi:10.1038/nmeth.2436
Europe PMC | doi

Okawa S, Fischer B, Krijgsveld J. (2013)

Properties of isotope patterns and their utility for peptide identification in large-scale proteomic experiments

Rapid Commun. Mass Spectrom. 27(9):1067-1075. doi:10.1002/rcm.6551
Europe PMC | doi

Castello A, Horos R, Strein C, Fischer B, Eichelbaum K, Steinmetz LM, Krijgsveld J, Hentze MW. (2013)

System-wide identification of RNA-binding proteins by interactome capture

Nat Protoc 8(3):491-500. doi:10.1038/nprot.2013.020
Europe PMC | doi


Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P. (2012)

A cross-platform toolkit for mass spectrometry and proteomics

Nat. Biotechnol. 30(10):918-920. doi:10.1038/nbt.2377
Europe PMC | doi

Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW. (2012)

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.

Cell 149(6):1393-1406. doi:10.1016/j.cell.2012.04.031
Europe PMC | doi


Horn T, Sandmann T, Fischer B, Axelsson E, Huber W, Boutros M. (2011)

Mapping of signaling networks through synthetic genetic interaction analysis by RNAi

Nat. Methods 8(4):341-346. doi:10.1038/nmeth.1581
Europe PMC | doi

Axelsson E, Sandmann T, Horn T, Boutros M, Huber W, Fischer B. (2011)

Extracting quantitative genetic interaction phenotypes from matrix combinatorial RNAi

BMC Bioinformatics 12:342. doi:10.1186/1471-2105-12-342
Europe PMC | doi


Held M, Schmitz MH, Fischer B, Walter T, Neumann B, Olma MH, Peter M, Ellenberg J, Gerlich DW. (2010)

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging.

Nat. Methods 7(9):747-754. doi:10.1038/nmeth.1486
Europe PMC | doi

Kaynig V, Fischer B, Müller E, Buhmann JM. (2010)

Fully automatic stitching and distortion correction of transmission electron microscope images

J. Struct. Biol. 171(2):163-173. doi:10.1016/j.jsb.2010.04.012
Europe PMC | doi