EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Publications

Total: 9 publication(s)

2015

Brennecke P, Reyes A, Pinto S, Rattay K, Nguyen M, Küchler R, Huber W, Kyewski B, Steinmetz LM. (2015)

Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells.

Nat. Immunol. 16(9):933-941. doi:10.1038/ni.3246
Europe PMC | doi

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. (2015)

Orchestrating high-throughput genomic analysis with Bioconductor.

Nat. Methods 12(2):115-121. doi:10.1038/nmeth.3252
Europe PMC | doi


2014

Klimmeck D, Cabezas-Wallscheid N, Reyes A, von Paleske L, Renders S, Hansson J, Krijgsveld J, Huber W, Trumpp A. (2014)

Transcriptome-wide Profiling and Posttranscriptional Analysis of Hematopoietic Stem/Progenitor Cell Differentiation toward Myeloid Commitment.

Stem Cell Reports 3(5):858-875. doi:10.1016/j.stemcr.2014.08.012
Europe PMC | doi

Cabezas-Wallscheid N, Klimmeck D, Hansson J, Lipka DB, Reyes A, Wang Q, Weichenhan D, Lier A, von Paleske L, Renders S, Wünsche P, Zeisberger P, Brocks D, Gu L, Herrmann C, Haas S, Essers MA, Brors B, Eils R, Huber W, Milsom MD, Plass C, Krijgsveld J, Trumpp A. (2014)

Identification of Regulatory Networks in HSCs and Their Immediate Progeny via Integrated Proteome, Transcriptome, and DNA Methylome Analysis

Cell Stem Cell 15(4):507-522. doi:10.1016/j.stem.2014.07.005
Europe PMC | doi


2013

Reyes A, Anders S, Weatheritt RJ, Gibson TJ, Steinmetz LM, Huber W. (2013)

Drift and conservation of differential exon usage across tissues in primate species

Proc. Natl. Acad. Sci. U.S.A. 110(38):15377-15382. doi:10.1073/pnas.1307202110
Europe PMC | doi

Reyes A, Blume Carolin, Pelechano V, Jakob P, Steinmetz LM, Zenz T, Huber W. (2013)

Mutated SF3B1 is associated with transcript isoform changes of the genes UQCC and RPL31 both in CLLs and uveal melanomas

doi:http://dx.doi.org/10.1101/000992
doi

Zarnack K, König J, Tajnik M, Martincorena I, Eustermann S, Stévant I, Reyes A, Anders S, Luscombe NM, Ule J. (2013)

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

Cell 152(3):453-466. doi:10.1016/j.cell.2012.12.023
Europe PMC | doi


2012

Anders S, Reyes A, Huber W. (2012)

Detecting differential usage of exons from RNA-seq data

Genome Res. 22(10):2008-2017. doi:10.1101/gr.133744.111
Europe PMC | doi

Olender T, Waszak SM, Viavant M, Khen M, Ben-Asher E, Reyes A, Nativ N, Wysocki CJ, Ge D, Lancet D. (2012)

Personal receptor repertoires: olfaction as a model

BMC Genomics 13:414. doi:10.1186/1471-2164-13-414
Europe PMC | doi