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Staff at EMBL

Sebastian Waszak

Postdoctoral Fellow
Korbel Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data. Waszak, S.M., Kilpinen, H., Gschwind, A.R., Orioli, A., Raghav, S.K., Witwicki, R.M., Migliavacca, E., Yurovsky, A., Lappalainen, T., Hernandez, N., Reymond, A., Dermitzakis, E.T. & Deplancke, B. Bioinformatics. 2014 Jan 15;30(2):165-71. doi: 10.1093/bioinformatics/btt667.Epub 2013 Nov 18. Europe PMC

Rounding up natural gene expression variation during development. Waszak, S.M. & Deplancke, B. Dev Cell. 2013 Dec 23;27(6):601-3. doi: 10.1016/j.devcel.2013.12.007. Europe PMC

Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Kilpinen, H.*, Waszak, S.M.*, Gschwind, A.R.*, Raghav, S.K., Witwicki, R.M., Orioli, A., Migliavacca, E., Wiederkehr, M., Gutierrez-Arcelus, M., Panousis, N.I., Yurovsky, A., Lappalainen, T., Romano-Palumbo, L., Planchon, A., Bielser, D., Bryois, J., Padioleau, I., Udin, G., Thurnheer, S., Hacker, D., Core, L.J., Lis, J.T., Hernandez, N., Reymond, A., Deplancke, B. & Dermitzakis, E.T. Science. 2013 Nov 8;342(6159):744-7. doi: 10.1126/science.1242463. Epub 2013 Oct17.
(*equal contribution) Europe PMC

A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks. Gubelmann, C., Waszak, S.M., Isakova, A., Holcombe, W., Hens, K., Iagovitina, A., Feuz, J.D., Raghav, S.K., Simicevic, J. & Deplancke, B. Mol Syst Biol. 2013 Aug 6;9:682. doi: 10.1038/msb.2013.38. Europe PMC

Genomic variation and its impact on gene expression in Drosophila melanogaster. Massouras, A.*, Waszak, S.M.*, Albarca-Aguilera, M., Hens, K., Holcombe, W., Ayroles, J.F., Dermitzakis, E.T., Stone, E.A., Jensen, J.D., Mackay, T.F. & Deplancke, B. PLoS Genet. 2012;8(11):e1003055. doi: 10.1371/journal.pgen.1003055. Epub 2012 Nov15.
(*equal contribution) Europe PMC

Personal receptor repertoires: olfaction as a model. Olender, T., Waszak, S.M., Viavant, M., Khen, M., Ben-Asher, E., Reyes, A., Nativ, N., Wysocki, C.J., Ge, D. & Lancet, D. BMC Genomics. 2012 Aug 21;13:414. doi: 10.1186/1471-2164-13-414. Europe PMC

Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPbeta and KAISO. Raghav, S.K*., Waszak, S.M.*, Krier, I., Gubelmann, C., Isakova, A., Mikkelsen, T.S. & Deplancke, B. Mol Cell. 2012 May 11;46(3):335-50. doi: 10.1016/j.molcel.2012.03.017. Epub 2012Apr 19.
(*equal contribution) Europe PMC

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions. Schlattl, A., Anders, S., Waszak, S.M., Huber, W. & Korbel, J.O. Genome Res. 2011 Dec;21(12):2004-13. doi: 10.1101/gr.122614.111. Epub 2011 Aug23. Europe PMC

Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity. Waszak, S.M., Hasin, Y., Zichner, T., Olender, T., Keydar, I., Khen, M., Stutz, A.M., Schlattl, A., Lancet, D. & Korbel, J.O. PLoS Comput Biol. 2010 Nov 11;6(11):e1000988. doi: 10.1371/journal.pcbi.1000988. Europe PMC

Variation in transcription factor binding among humans. Kasowski, M.*, Grubert, F.*, Heffelfinger, C., Hariharan, M., Asabere, A., Waszak, S.M., Habegger, L., Rozowsky, J., Shi, M., Urban, A.E., Hong, M.Y., Karczewski, K.J., Huber, W., Weissman, S.M., Gerstein, M.B., Korbel, J.O. & Snyder, M. Science. 2010 Apr 9;328(5975):232-5. doi: 10.1126/science.1183621. Epub 2010 Mar18.
(*equal contribution) Europe PMC