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Staff at EMBL

Sebastian Waszak

Postdoctoral Fellow
Korbel Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 11 publication(s)

2014

Gubelmann C, Schwalie PC, Raghav SK, Röder E, Delessa T, Kiehlmann E, Waszak SM, Corsinotti A, Udin G, Holcombe W, Rudofsky G, Trono D, Wolfrum C, Deplancke B. (2014)
Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network
Elife (Cambridge) e03346. doi:10.7554/elife.03346
Europe PMC | doi

Waszak SM, Kilpinen H, Gschwind AR, Orioli A, Raghav SK, Witwicki RM, Migliavacca E, Yurovsky A, Lappalainen T, Hernandez N, Reymond A, Dermitzakis ET, Deplancke B. (2014)
Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data
Bioinformatics 30(2):165-171. doi:10.1093/bioinformatics/btt667
Europe PMC | doi


2013

Waszak SM, Deplancke B. (2013)
Rounding up natural gene expression variation during development
Dev. Cell 27(6):601-603. doi:10.1016/j.devcel.2013.12.007
Europe PMC | doi

Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, Bryois J, Padioleau I, Udin G, Thurnheer S, Hacker D, Core LJ, Lis JT, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET. (2013)
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription
Science 342(6159):744-747. doi:10.1126/science.1242463
Europe PMC | doi

Gubelmann C, Waszak SM, Isakova A, Holcombe W, Hens K, Iagovitina A, Feuz JD, Raghav SK, Simicevic J, Deplancke B. (2013)
A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks
Mol. Syst. Biol. 9:682. doi:10.1038/msb.2013.38
Europe PMC | doi


2012

Raghav SK, Waszak SM, Krier I, Gubelmann C, Isakova A, Mikkelsen TS, Deplancke B. (2012)
Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO
Mol. Cell 46(3):335-350. doi:10.1016/j.molcel.2012.03.017
Europe PMC | doi

Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, Dermitzakis ET, Stone EA, Jensen JD, Mackay TF, Deplancke B. (2012)
Genomic variation and its impact on gene expression in Drosophila melanogaster
PLoS Genet. 8(11):e1003055. doi:10.1371/journal.pgen.1003055
Europe PMC | doi

Olender T, Waszak SM, Viavant M, Khen M, Ben-Asher E, Reyes A, Nativ N, Wysocki CJ, Ge D, Lancet D. (2012)
Personal receptor repertoires: olfaction as a model
BMC Genomics 13:414. doi:10.1186/1471-2164-13-414
Europe PMC | doi


2011

Schlattl A, Anders S, Waszak SM, Huber W, Korbel JO. (2011)
Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions
Genome Res. 21(12):2004-2013. doi:10.1101/gr.122614.111
Europe PMC | doi


2010

Kasowski M, Grubert F, Heffelfinger C, Hariharan M, Asabere A, Waszak SM, Habegger L, Rozowsky J, Shi M, Urban AE, Hong MY, Karczewski KJ, Huber W, Weissman SM, Gerstein MB, Korbel JO, Snyder M. (2010)
Variation in transcription factor binding among humans
Science 328(5975):232-235. doi:10.1126/science.1183621
Europe PMC | doi

Waszak SM, Hasin Y, Zichner T, Olender T, Keydar I, Khen M, Stütz AM, Schlattl A, Lancet D, Korbel JO. (2010)
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity
PLoS Comput. Biol. 6(11):e1000988. doi:10.1371/journal.pcbi.1000988
Europe PMC | doi