High-throughput sequencing

CopySeqDiscovery and copy-number genotyping of genomic structural variants
DELLYIntegrated split-read and paired-end based structural variant discovery in massively parallel sequencing data
PEMerDiscovery of genomic structural variants by high-throughput and massive paired-end mapping

Sequence Analysis

BreakSeqNucleotide-resolution genotyping of structural variants in personal genomics data

Miscellaneous

BreakPtrMapping copy-number variation with high-density oligonucleotide tiling arrays.

PEMerDiscovery of genomic structural variants by high-throughput and massive paired-end mapping