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Staff at EMBL

Alison Waller

Postdoctoral Fellow
Typas Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 8 publication(s)

2014

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P. (2014)
Classification and quantification of bacteriophage taxa in human gut metagenomes
ISME J 8(7):1551-1552. doi:10.1038/ismej.2014.66
Europe PMC | doi

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P. (2014)
Classification and quantification of bacteriophage taxa in human gut metagenomes
ISME J 8(7):1391-1402. doi:10.1038/ismej.2014.30
Europe PMC | doi

Islam MA, Waller AS, Hug LA, Provart NJ, Edwards EA, Mahadevan R. (2014)
New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes.
PLoS ONE 9(4):e94808. doi:10.1371/journal.pone.0094808
Europe PMC | doi


2013

Kristensen DM, Waller AS, Yamada T, Bork P, Mushegian AR, Koonin EV. (2013)
Orthologous gene clusters and taxon signature genes for viruses of prokaryotes
J. Bacteriol. 195(5):941-950. doi:10.1128/jb.01801-12
Europe PMC | doi

Schloissnig S, Arumugam M, Sunagawa S, Mitreva M, Tap J, Zhu A, Waller A, Mende DR, Kultima JR, Martin J, Kota K, Sunyaev SR, Weinstock GM, Bork P. (2013)
Genomic variation landscape of the human gut microbiome
Nature 493(7430):45-50. doi:10.1038/nature11711
Europe PMC | doi


2012

Alonso-Sáez L, Waller AS, Mende DR, Bakker K, Farnelid H, Yager PL, Lovejoy C, Tremblay JÉ, Potvin M, Heinrich F, Estrada M, Riemann L, Bork P, Pedrós-Alió C, Bertilsson S. (2012)
Role for urea in nitrification by polar marine Archaea
Proc. Natl. Acad. Sci. U.S.A. 109(44):17989-17994. doi:10.1073/pnas.1201914109
Europe PMC | doi

Mende DR, Waller AS, Sunagawa S, Järvelin AI, Chan MM, Arumugam M, Raes J, Bork P. (2012)
Assessment of metagenomic assembly using simulated next generation sequencing data
PLoS ONE 7(2):e31386. doi:10.1371/journal.pone.0031386
Europe PMC | doi

Yamada T, Waller AS, Raes J, Zelezniak A, Perchat N, Perret A, Salanoubat M, Patil KR, Weissenbach J, Bork P. (2012)
Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours
Mol. Syst. Biol. 8:581. doi:10.1038/msb.2012.13
Europe PMC | doi