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Beck GroupPublications

Total: 28 publication(s)

2014

Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell ST, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, Hurt E, Carlomagno T, Gavin AC, Barabas O, Müller CW, van Noort V, Beck M, Bork P. (2014)
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.
Nucleic Acids Res. doi:10.1093/nar/gku1147
Europe PMC | doi

Ostenfeld MS, Jeppesen DK, Laurberg JR, Boysen AT, Bramsen JB, Primdal-Bengtson B, Hendrix A, Lamy P, Dagnaes-Hansen F, Rasmussen MH, Bui KH, Fristrup N, Christensen EI, Nordentoft I, Morth JP, Jensen JB, Pedersen JS, Beck M, Theodorescu D, Borre M, Howard KA, Dyrskjøt L, Orntoft TF. (2014)
Cellular Disposal of miR23b by RAB27-Dependent Exosome Release Is Linked to Acquisition of Metastatic Properties
Cancer Res. doi:10.1158/0008-5472.CAN-13-3512
Europe PMC | doi

Piazza I, Rutkowska A, Ori A, Walczak M, Metz J, Pelechano V, Beck M, Haering CH. (2014)
Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits
Nat. Struct. Mol. Biol. 21(6):560-568. doi:10.1038/nsmb.2831
Europe PMC | doi

Beck M, Glavy JS. (2014)
Toward understanding the structure of the vertebrate nuclear pore complex
Nucleus 5(2)
Europe PMC


2013

Banterle N, Bui KH, Lemke EA, Beck M. (2013)
Fourier ring correlation as a resolution criterion for super-resolution microscopy
J. Struct. Biol. 183(3):363-367. doi:10.1016/j.jsb.2013.05.004
Europe PMC | doi

Thierbach K, von Appen A, Thoms M, Beck M, Flemming D, Hurt E. (2013)
Protein interfaces of the conserved Nup84 complex from Chaetomium thermophilum shown by crosslinking mass spectrometry and electron microscopy
Structure 21(9):1672-1682. doi:10.1016/j.str.2013.07.004
Europe PMC | doi

Milles S, Huy Bui K, Koehler C, Eltsov M, Beck M, Lemke EA. (2013)
Facilitated aggregation of FG nucleoporins under molecular crowding conditions
EMBO Rep. 14(2):178-183. doi:10.1038/embor.2012.204
Europe PMC | doi


2012

Walzthoeni T, Claassen M, Leitner A, Herzog F, Bohn S, Förster F, Beck M, Aebersold R. (2012)
False discovery rate estimation for cross-linked peptides identified by mass spectrometry
Nat. Methods 9(9):901-903. doi:10.1038/nmeth.2103
Europe PMC | doi

Herzog F, Kahraman A, Boehringer D, Mak R, Bracher A, Walzthoeni T, Leitner A, Beck M, Hartl FU, Ban N, Malmström L, Aebersold R. (2012)
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry
Science 337(6100):1348-1352. doi:10.1126/science.1221483
Europe PMC | doi

Xu M, Beck M, Alber F. (2012)
High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching
J. Struct. Biol. 178(2):152-164. doi:10.1016/j.jsb.2012.02.014
Europe PMC | doi


2011

Xu M, Beck M, Alber F. (2011)
Template-free detection of macromolecular complexes in cryo electron tomograms
Bioinformatics 27(13):i69-76. doi:10.1093/bioinformatics/btr207
Europe PMC | doi

Reiter L, Rinner O, Picotti P, Hüttenhain R, Beck M, Brusniak MY, Hengartner MO, Aebersold R. (2011)
mProphet: automated data processing and statistical validation for large-scale SRM experiments
Nat. Methods 8(5):430-435. doi:10.1038/nmeth.1584
Europe PMC | doi

Beck M, Topf M, Frazier Z, Tjong H, Xu M, Zhang S, Alber F. (2011)
Exploring the spatial and temporal organization of a cell's proteome
J. Struct. Biol. 173(3):483-496. doi:10.1016/j.jsb.2010.11.011
Europe PMC | doi

Beck M, Claassen M, Aebersold R. (2011)
Comprehensive proteomics
Curr. Opin. Biotechnol. 22(1):3-8. doi:10.1016/j.copbio.2010.09.002
Europe PMC | doi

Schmidt A, Beck M, Malmström J, Lam H, Claassen M, Campbell D, Aebersold R. (2011)
Absolute quantification of microbial proteomes at different states by directed mass spectrometry
Mol. Syst. Biol. 7:510. doi:10.1038/msb.2011.37
Europe PMC | doi

Beck M, Schmidt A, Malmstroem J, Claassen M, Ori A, Szymborska A, Herzog F, Rinner O, Ellenberg J, Aebersold R. (2011)
The quantitative proteome of a human cell line
Mol. Syst. Biol. 7:549. doi:10.1038/msb.2011.82
Europe PMC | doi


2010

Bohn S, Beck F, Sakata E, Walzthoeni T, Beck M, Aebersold R, Förster F, Baumeister W, Nickell S. (2010)
Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution
Proc. Natl. Acad. Sci. U.S.A. 107(49):20992-20997. doi:10.1073/pnas.1015530107
Europe PMC | doi

Leitner A, Walzthoeni T, Kahraman A, Herzog F, Rinner O, Beck M, Aebersold R. (2010)
Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics
Mol. Cell Proteomics 9(8):1634-1649. doi:10.1074/mcp.r000001-mcp201
Europe PMC | doi

Förster F, Han BG, Beck M. (2010)
Visual proteomics
Meth. Enzymol. 483:215-243. doi:10.1016/s0076-6879(10)83011-3
Europe PMC | doi


2009

Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, Aebersold R. (2009)
Visual proteomics of the human pathogen Leptospira interrogans
Nat. Methods 6(11):817-823. doi:10.1038/nmeth.1390
Europe PMC | doi

Medalia N, Beer A, Zwickl P, Mihalache O, Beck M, Medalia O, Navon A. (2009)
Architecture and molecular mechanism of PAN, the archaeal proteasome regulatory ATPase
J. Biol. Chem. 284(34):22952-22960. doi:10.1074/jbc.m809643200
Europe PMC | doi

Malmström J, Beck M, Schmidt A, Lange V, Deutsch EW, Aebersold R. (2009)
Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
Nature 460(7256):762-765. doi:10.1038/nature08184
Europe PMC | doi


2008

Beck M, Medalia O. (2008)
Structural and functional insights into nucleocytoplasmic transport
Histol. Histopathol. 23(8):1025-1033.
Europe PMC

Rinner O, Seebacher J, Walzthoeni T, Mueller LN, Beck M, Schmidt A, Mueller M, Aebersold R. (2008)
Identification of cross-linked peptides from large sequence databases
Nat. Methods 5(4):315-318. doi:10.1038/nmeth.1192
Europe PMC | doi


2007

Beck M, Lucić V, Förster F, Baumeister W, Medalia O. (2007)
Snapshots of nuclear pore complexes in action captured by cryo-electron tomography
Nature 449(7162):611-615. doi:10.1038/nature06170
Europe PMC | doi

Medalia O, Beck M, Ecke M, Weber I, Neujahr R, Baumeister W, Gerisch G. (2007)
Organization of actin networks in intact filopodia
Curr. Biol. 17(1):79-84. doi:10.1016/j.cub.2006.11.022
Europe PMC | doi


2006

Garvalov BK, Zuber B, Bouchet-Marquis C, Kudryashev M, Gruska M, Beck M, Leis A, Frischknecht F, Bradke F, Baumeister W, Dubochet J, Cyrklaff M. (2006)
Luminal particles within cellular microtubules
J. Cell Biol. 174(6):759-765. doi:10.1083/jcb.200606074
Europe PMC | doi


2004

Beck M, Förster F, Ecke M, Plitzko JM, Melchior F, Gerisch G, Baumeister W, Medalia O. (2004)
Nuclear pore complex structure and dynamics revealed by cryoelectron tomography
Science 306(5700):1387-1390. doi:10.1126/science.1104808
Europe PMC | doi