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Staff at EMBL

Dr. Yan Ping Yuan

Bioinformatics Lab Manager
Bork Group

EMBL Heidelberg, Meyerhofstra├če 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Detection of coding microsatellite frameshift mutations in DNA mismatch repair-deficient mouse intestinal tumors. Woerner, S.M., Tosti, E., Yuan, Y.P., Kloor, M., Bork, P., Edelmann, W. & Gebert, J. Mol Carcinog. 2014 Sep 11. doi: 10.1002/mc.22213. Europe PMC

Pathogenesis of DNA repair-deficient cancers: a statistical meta-analysis of putative Real Common Target genes. Woerner, S.M., Benner, A., Sutter, C., Schiller, M., Yuan, Y.P., Keller, G., Bork, P., Doeberitz, M.K. & Gebert, J.F. Oncogene 2003 Apr 17;22(15):2226-35. Europe PMC

HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources. Fredman, D., Siegfried, M., Yuan, Y.P., Bork, P., Lehvaslaiho, H. & Brookes, A.J. Nucleic Acids Res 2002 Jan 1;30(1):387-91. Europe PMC

Systematic identification of genes with coding microsatellites mutated in DNA mismatch repair-deficient cancer cells. Woerner, S.M., Gebert, J., Yuan, Y.P., Sutter, C., Ridder, R., Bork, P. & von Knebel Doeberitz, M. Int J Cancer 2001 Jul 1;93(1):12-9. Europe PMC

Frameshift peptide-derived T-cell epitopes: a source of novel tumor-specific antigens. Linnebacher, M., Gebert, J., Rudy, W., Woerner, S., Yuan, Y.P., Bork, P. & von Knebel Doeberitz, M. Int J Cancer 2001 Jul 1;93(1):6-11. Europe PMC

Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames. Dandekar, T., Huynen, M., Regula, J.T., Ueberle, B., Zimmermann, C.U., Andrade, M.A., Doerks, T., Sanchez-Pulido, L., Snel, B., Suyama, M., Yuan, Y.P., Herrmann, R. & Bork, P. Nucleic Acids Res 2000 Sep 1;28(17):3278-88. Europe PMC

NAIL-Network Analysis Interface for Linking HMMER results. Sanchez-Pulido, L., Yuan, Y.P., Andrade, M.A. & Bork, P. Bioinformatics 2000 Jul;16(7):656-7. Europe PMC

HGBASE: a database of SNPs and other variations in and around human genes. Brookes, A.J., Lehvaslaiho, H., Siegfried, M., Boehm, J.G., Yuan, Y.P., Sarkar, C.M., Bork, P. & Ortigao, F. Nucleic Acids Res 2000 Jan 1;28(1):356-60 Europe PMC

Predicting function: from genes to genomes and back. Bork, P., Dandekar, T., Diaz-Lazcoz, Y., Eisenhaber, F., Huynen, M. & Yuan, Y. J Mol Biol 1998 Nov 6 283(4) 707-725 Europe PMC

Homology-based fold predictions for Mycoplasma genitalium proteins. Huynen, M., Doerks, T., Eisenhaber, F., Orengo, C., Sunyaev, S., Yuan, Y. & Bork, P. J Mol Biol 1998 Jul 17;280(3):323-6. Europe PMC

Towards detection of orthologues in sequence databases. Yuan, Y.P., Eulenstein, O., Vingron, M. & Bork, P. Bioinformatics 1998;14(3):285-9 Europe PMC

Secreted fringe-like signaling molecules may be glycosyltransferases Yuan, Y.P., Schultz, J., Mlodzik, M. & Bork, P. Cell 1997 Jan 10;88(1):9-11 Europe PMC