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Staff at EMBL

CP-60003356

Dr. Yan Ping Yuan

Bioinformatics Lab Manager
Bork Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 15 publication(s)

2014

Woerner SM, Tosti E, Yuan YP, Kloor M, Bork P, Edelmann W, Gebert J. (2014)
Detection of coding microsatellite frameshift mutations in DNA mismatch repair-deficient mouse intestinal tumors
Mol. Carcinog. doi:10.1002/mc.22213
Europe PMC | doi


2010

Woerner SM, Yuan YP, Benner A, Korff S, von Knebel Doeberitz M, Bork P. (2010)
SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology
Nucleic Acids Res. 38(Database issue):D682-9. doi:10.1093/nar/gkp839
Europe PMC | doi


2009

Roeckel N, Woerner SM, Kloor M, Yuan YP, Patsos G, Gromes R, Kopitz J, Gebert J. (2009)
High frequency of LMAN1 abnormalities in colorectal tumors with microsatellite instability
Cancer Res. 69(1):292-299. doi:10.1158/0008-5472.can-08-3314
Europe PMC | doi


2008

Korff S, Woerner SM, Yuan YP, Bork P, von Knebel Doeberitz M, Gebert J. (2008)
Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instability
BMC Cancer 8:329. doi:10.1186/1471-2407-8-329
Europe PMC | doi


2003

Woerner SM, Benner A, Sutter C, Schiller M, Yuan YP, Keller G, Bork P, Doeberitz Mv, Gebert JF. (2003)
Pathogenesis of DNA repair-deficient cancers: a statistical meta-analysis of putative Real Common Target genes
Oncogene 22(15):2226-2235. doi:10.1038/sj.onc.1206421
Europe PMC | doi


2002

Fredman D, Siegfried M, Yuan YP, Bork P, Lehväslaiho H, Brookes AJ. (2002)
HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources
Nucleic Acids Res. 30(1):387-391. doi:10.1093/nar/30.1.387
Europe PMC | doi


2001

Linnebacher M, Gebert J, Rudy W, Woerner S, Yuan YP, Bork P, von Knebel Doeberitz M. (2001)
Frameshift peptide-derived T-cell epitopes: a source of novel tumor-specific antigens
Int. J. Cancer 93(1):6-11. doi:10.1002/ijc.1298
Europe PMC | doi

Woerner SM, Gebert J, Yuan YP, Sutter C, Ridder R, Bork P, von Knebel Doeberitz M. (2001)
Systematic identification of genes with coding microsatellites mutated in DNA mismatch repair-deficient cancer cells
Int. J. Cancer 93(1):12-19. doi:10.1002/ijc.1299
Europe PMC | doi


2000

Dandekar T, Huynen M, Regula JT, Ueberle B, Zimmermann CU, Andrade MA, Doerks T, Sánchez-Pulido L, Snel B, Suyama M, Yuan YP, Herrmann R, Bork P. (2000)
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames
Nucleic Acids Res. 28(17):3278-3288. doi:10.1093/nar/28.17.3278
Europe PMC | doi

Sánchez-Pulido L, Yuan YP, Andrade MA, Bork P. (2000)
NAIL-Network Analysis Interface for Linking HMMER results
Bioinformatics 16(7):656-657. doi:10.1093/bioinformatics/16.7.656
Europe PMC | doi

Brookes AJ, Lehväslaiho H, Siegfried M, Boehm JG, Yuan YP, Sarkar CM, Bork P, Ortigao F. (2000)
HGBASE: a database of SNPs and other variations in and around human genes
Nucleic Acids Res. 28(1):356-360. doi:10.1093/nar/28.1.356
Europe PMC | doi


1998

Bork P, Dandekar T, Diaz-Lazcoz Y, Eisenhaber F, Huynen M, Yuan Y. (1998)
Predicting function: from genes to genomes and back
J. Mol. Biol. 283(4):707-725. doi:10.1006/jmbi.1998.2144
Europe PMC | doi

Huynen M, Doerks T, Eisenhaber F, Orengo C, Sunyaev S, Yuan Y, Bork P. (1998)
Homology-based fold predictions for Mycoplasma genitalium proteins
J. Mol. Biol. 280(3):323-326. doi:10.1006/jmbi.1998.1884
Europe PMC | doi

Yuan YP, Eulenstein O, Vingron M, Bork P. (1998)
Towards detection of orthologues in sequence databases
Paper presented at the German Conference on Bioinformatics (GCB 97), KLOSTER IRSEE, GERMANY, SEP, 1997.Bioinformatics 14(3):285-289. doi:10.1093/bioinformatics/14.3.285
Europe PMC | doi


1997

Yuan YP, Schultz J, Mlodzik M, Bork P. (1997)
Secreted fringe-like signaling molecules may be glycosyltransferases
Cell 88(1):9-11. doi:10.1016/s0092-8674(00)81852-8
Europe PMC | doi