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Staff at EMBL

Pablo Minguez Paniagua

Postdoctoral Fellow
Bork Group

EMBL Heidelberg, Meyerhofstra├če 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Annotation of the M. tuberculosis hypothetical orfeome: adding functional information to more than half of the uncharacterized proteins. Doerks, T., van Noort, V., Minguez, P. & Bork, P. PLoS One. 2012;7(4):e34302. doi: 10.1371/journal.pone.0034302. Epub 2012 Apr 2. Europe PMC

OGEE: an online gene essentiality database. Chen, W.H., Minguez, P., Lercher, M.J. & Bork, P. Nucleic Acids Res. 2012 Jan;40(Database issue):D901-6. doi: 10.1093/nar/gkr986.Epub 2011 Nov 10. Europe PMC

Deciphering a global network of functionally associated post-translational modifications. Minguez, P., Parca, L., Diella, F., Mende, D.R., Kumar, R., Helmer-Citterich, M., Gavin, A.C., van Noort, V. & Bork, P. Mol Syst Biol. 2012 Jul 17;8:599. doi: 10.1038/msb.2012.31. Europe PMC

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., Jensen, L.J. & von Mering, C. Nucleic Acids Res. 2011 Jan;39(Database issue):D561-8. Epub 2010 Nov 2. Europe PMC

Assessing the biological significance of gene expression signatures and co-expression modules by studying their network properties. Minguez, P. & Dopazo, J. PLoS One. 2011 Mar 7;6(3):e17474. Europe PMC

Functional genomics and networks: new approaches in the extraction of complex gene modules. Minguez, P. & Dopazo, J. Expert Rev Proteomics. 2010 Feb;7(1):55-63. Europe PMC

Selection upon genome architecture: conservation of functional neighborhoods with changing genes. Al-Shahrour, F., Minguez, P., Marques-Bonet, T., Gazave, E., Navarro, A. & Dopazo, J. PLoS Comput Biol. 2010 Oct 7;6(10):e1000953. Europe PMC

SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Minguez, P., Gotz, S., Montaner, D., Al-Shahrour, F. & Dopazo, J. Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W109-14. Epub 2009 May19. Europe PMC

Gene set internal coherence in the context of functional profiling. Montaner, D., Minguez, P., Al-Shahrour, F. & Dopazo, J. BMC Genomics. 2009 Apr 27;10:197. Europe PMC

Controlled ovarian stimulation induces a functional genomic delay of the endometrium with potential clinical implications. Horcajadas, J.A., Minguez, P., Dopazo, J., Esteban, F.J., Dominguez, F., Giudice, L.C., Pellicer, A. & Simon, C. J Clin Endocrinol Metab. 2008 Nov;93(11):4500-10. Epub 2008Aug 12. Europe PMC

GEPAS, a web-based tool for microarray data analysis and interpretation. Tarraga, J., Medina, I., Carbonell, J., Huerta-Cepas, J., Minguez, P., Alloza, E., Al-Shahrour, F., Vegas-Azcarate, S., Goetz, S., Escobar, P., Garcia-Garcia, F., Conesa, A., Montaner, D. & Dopazo, J. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W308-14. Epub 2008 May28. Europe PMC

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Al-Shahrour, F., Carbonell, J., Minguez, P., Goetz, S., Conesa, A., Tarraga, J., Medina, I., Alloza, E., Montaner, D. & Dopazo, J. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W341-6. Epub 2008 May31. Europe PMC

Functional profiling of microarray experiments using text-mining derived bioentities. Minguez, P., Al-Shahrour, F., Montaner, D. & Dopazo, J. Bioinformatics. 2007 Nov 15;23(22):3098-9. Epub 2007 Sep 13. Europe PMC

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Al-Shahrour, F., Minguez, P., Tarraga, J., Medina, I., Alloza, E., Montaner, D. & Dopazo, J. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W91-6. Epub 2007 May 3. Europe PMC

From genes to functional classes in the study of biological systems. Al-Shahrour, F., Arbiza, L., Dopazo, H., Huerta-Cepas, J., Minguez, P., Montaner, D. & Dopazo, J. BMC Bioinformatics. 2007 Apr 3;8:114. Europe PMC

Next station in microarray data analysis: GEPAS. Montaner, D., Tarraga, J., Huerta-Cepas, J., Burguet, J., Vaquerizas, J.M., Conde, L., Minguez, P., Vera, J., Mukherjee, S., Valls, J., Pujana, M.A., Alloza, E., Herrero, J., Al-Shahrour, F. & Dopazo, J. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W486-91. Europe PMC

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Al-Shahrour, F., Minguez, P., Tarraga, J., Montaner, D., Alloza, E., Vaquerizas, J.M., Conde, L., Blaschke, C., Vera, J. & Dopazo, J. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W472-6. Europe PMC

A function-centric approach to the biological interpretation of microarray time-series. Minguez, P., Al-Shahrour, F. & Dopazo, J. Genome Inform. 2006;17(2):57-66. Europe PMC

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. Al-Shahrour, F., Minguez, P., Vaquerizas, J.M., Conde, L. & Dopazo, J. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W460-4. Europe PMC