Top image

Staff at EMBL

CP-60010623

Pablo Minguez Paniagua

Postdoctoral Fellow
Bork Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 22 publication(s)

2013

Minguez P, Letunic I, Parca L, Bork P. (2013)
PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins
Nucleic Acids Res. 41(Database issue):D306-11. doi:10.1093/nar/gks1230
Europe PMC | doi

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. (2013)
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
Nucleic Acids Res. 41(Database issue):D808-15. doi:10.1093/nar/gks1094
Europe PMC | doi


2012

García-Alonso L, Alonso R, Vidal E, Amadoz A, de María A, Minguez P, Medina I, Dopazo J. (2012)
Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments
Nucleic Acids Res. 40(20):e158. doi:10.1093/nar/gks699
Europe PMC | doi

Doerks T, van Noort V, Minguez P, Bork P. (2012)
Annotation of the M. tuberculosis hypothetical orfeome: adding functional information to more than half of the uncharacterized proteins
PLoS ONE 7(4):e34302. doi:10.1371/journal.pone.0034302
Europe PMC | doi

Minguez P, Parca L, Diella F, Mende DR, Kumar R, Helmer-Citterich M, Gavin AC, van Noort V, Bork P. (2012)
Deciphering a global network of functionally associated post-translational modifications
Mol. Syst. Biol. 8:599. doi:10.1038/msb.2012.31
Europe PMC | doi

Chen WH, Minguez P, Lercher MJ, Bork P. (2012)
OGEE: an online gene essentiality database
Nucleic Acids Res. 40(Database issue):D901-6. doi:10.1093/nar/gkr986
Europe PMC | doi


2011

Minguez P, Dopazo J. (2011)
Assessing the biological significance of gene expression signatures and co-expression modules by studying their network properties
PLoS ONE 6(3):e17474. doi:10.1371/journal.pone.0017474
Europe PMC | doi

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C. (2011)
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
Nucleic Acids Res. 39(Database issue):D561-8. doi:10.1093/nar/gkq973
Europe PMC | doi


2010

Minguez P, Dopazo J. (2010)
Functional genomics and networks: new approaches in the extraction of complex gene modules
Expert Rev Proteomics 7(1):55-63. doi:10.1586/epr.09.103
Europe PMC | doi

Al-Shahrour F, Minguez P, Marqués-Bonet T, Gazave E, Navarro A, Dopazo J. (2010)
Selection upon genome architecture: conservation of functional neighborhoods with changing genes
PLoS Comput. Biol. 6(10):e1000953. doi:10.1371/journal.pcbi.1000953
Europe PMC | doi


2009

Minguez P, Götz S, Montaner D, Al-Shahrour F, Dopazo J. (2009)
SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks
Nucleic Acids Res. 37(Web Server issue):W109-14. doi:10.1093/nar/gkp402
Europe PMC | doi

Montaner D, Minguez P, Al-Shahrour F, Dopazo J. (2009)
Gene set internal coherence in the context of functional profiling
BMC Genomics 10:197. doi:10.1186/1471-2164-10-197
Europe PMC | doi


2008

Horcajadas JA, Mínguez P, Dopazo J, Esteban FJ, Domínguez F, Giudice LC, Pellicer A, Simón C. (2008)
Controlled ovarian stimulation induces a functional genomic delay of the endometrium with potential clinical implications
J. Clin. Endocrinol. Metab. 93(11):4500-4510. doi:10.1210/jc.2008-0588
Europe PMC | doi

Al-Shahrour F, Carbonell J, Minguez P, Goetz S, Conesa A, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J. (2008)
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
Nucleic Acids Res. 36(Web Server issue):W341-6. doi:10.1093/nar/gkn318
Europe PMC | doi

Tárraga J, Medina I, Carbonell J, Huerta-Cepas J, Minguez P, Alloza E, Al-Shahrour F, Vegas-Azcárate S, Goetz S, Escobar P, Garcia-Garcia F, Conesa A, Montaner D, Dopazo J. (2008)
GEPAS, a web-based tool for microarray data analysis and interpretation
Nucleic Acids Res. 36(Web Server issue):W308-14. doi:10.1093/nar/gkn303
Europe PMC | doi


2007

Minguez P, Al-Shahrour F, Montaner D, Dopazo J. (2007)
Functional profiling of microarray experiments using text-mining derived bioentities
Bioinformatics 23(22):3098-3099. doi:10.1093/bioinformatics/btm445
Europe PMC | doi

Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J. (2007)
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
Nucleic Acids Res. 35(Web Server issue):W91-6. doi:10.1093/nar/gkm260
Europe PMC | doi

Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J. (2007)
From genes to functional classes in the study of biological systems
BMC Bioinformatics 8:114. doi:10.1186/1471-2105-8-114
Europe PMC | doi


2006

Al-Shahrour F, Minguez P, Tárraga J, Montaner D, Alloza E, Vaquerizas JM, Conde L, Blaschke C, Vera J, Dopazo J. (2006)
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments
Nucleic Acids Res. 34(Web Server issue):W472-6. doi:10.1093/nar/gkl172
Europe PMC | doi

Montaner D, Tárraga J, Huerta-Cepas J, Burguet J, Vaquerizas JM, Conde L, Minguez P, Vera J, Mukherjee S, Valls J, Pujana MA, Alloza E, Herrero J, Al-Shahrour F, Dopazo J. (2006)
Next station in microarray data analysis: GEPAS
Nucleic Acids Res. 34(Web Server issue):W486-91. doi:10.1093/nar/gkl197
Europe PMC | doi

Minguez P, Al-Shahrour F, Dopazo J. (2006)
A function-centric approach to the biological interpretation of microarray time-series
Genome Inform 17(2):57-66.
Europe PMC


2005

Al-Shahrour F, Minguez P, Vaquerizas JM, Conde L, Dopazo J. (2005)
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
Nucleic Acids Res. 33(Web Server issue):W460-4. doi:10.1093/nar/gki456
Europe PMC | doi