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Staff at EMBL

CP-60012762

Jens Roat Kultima

Predoctoral Fellow
Bork Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 13 publication(s)

2014

Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, Wang J, Xu X, Xiao L, Liang S, Zhang D, Zhang Z, Chen W, Zhao H, Al-Aama JY, Edris S, Yang H, Wang J, Hansen T, Nielsen HB, Brunak S, Kristiansen K, Guarner F, Pedersen O, Doré J, Ehrlich SD, Bork P, Wang J. (2014)
An integrated catalog of reference genes in the human gut microbiome
Nat. Biotechnol. doi:10.1038/nbt.2942
Europe PMC | doi

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P. (2014)
Classification and quantification of bacteriophage taxa in human gut metagenomes
ISME J 8(7):1551-1552. doi:10.1038/ismej.2014.66
Europe PMC | doi

Waller AS, Yamada T, Kristensen DM, Kultima JR, Sunagawa S, Koonin EV, Bork P. (2014)
Classification and quantification of bacteriophage taxa in human gut metagenomes
ISME J 8(7):1391-1402. doi:10.1038/ismej.2014.30
Europe PMC | doi

Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD. (2014)
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
Nat. Biotechnol. doi:10.1038/nbt.2939
Europe PMC | doi


2013

Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, Wang J, Li J, Doré J, Ehrlich SD, Stamatakis A, Bork P. (2013)
Metagenomic species profiling using universal phylogenetic marker genes
Nat. Methods 10(12):1196-1199. doi:10.1038/nmeth.2693
Europe PMC | doi

Forslund K, Sunagawa S, Kultima JR, Mende DR, Arumugam M, Typas A, Bork P. (2013)
Country-specific antibiotic use practices impact the human gut resistome
Genome Res. 23(7):1163-1169. doi:10.1101/gr.155465.113
Europe PMC | doi

Östman C, Borg F, Roat C, Kultima JR, Wong SYG. (2013)
Cnidae in the sea anemone Sagartiogeton viduatus (Muller, 1776) (Cnidaria, Anthozoa); A comparison to cnidae in the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria, Anthozoa)
Acta Zool 94(4):392–409.
Europe PMC

Schloissnig S, Arumugam M, Sunagawa S, Mitreva M, Tap J, Zhu A, Waller A, Mende DR, Kultima JR, Martin J, Kota K, Sunyaev SR, Weinstock GM, Bork P. (2013)
Genomic variation landscape of the human gut microbiome
Nature 493(7430):45-50. doi:10.1038/nature11711
Europe PMC | doi


2012

Xu C, Miranda-Nieves D, Ankrum JA, Matthiesen ME, Phillips JA, Roes I, Wojtkiewicz GR, Juneja V, Kultima JR, Zhao W, Vemula PK, Lin CP, Nahrendorf M, Karp JM. (2012)
Tracking mesenchymal stem cells with iron oxide nanoparticle loaded poly(lactide-co-glycolide) microparticles
Nano Lett. 12(8):4131-4139. doi:10.1021/nl301658q
Europe PMC | doi

Kultima JR, Sunagawa S, Li J, Chen W, Chen H, Mende DR, Arumugam M, Pan Q, Liu B, Qin J, Wang J, Bork P. (2012)
MOCAT: a metagenomics assembly and gene prediction toolkit
PLoS ONE 7(10):e47656. doi:10.1371/journal.pone.0047656
Europe PMC | doi


2010

Guy L, Kultima JR, Andersson SG. (2010)
genoPlotR: comparative gene and genome visualization in R
Bioinformatics 26(18):2334-2335. doi:10.1093/bioinformatics/btq413
Europe PMC | doi

Ostman C, Roat Kultima J, Roat C, Rundblom K. (2010)
Acontia and mesentery nematocysts of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa)
Sci. Mar. 74(3):483-497.
Europe PMC

Ostman C, Roat Kultima J, Wong SYG. (2010)
Dart formation in nematocysts of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa)
Sci. Mar. 74(3):499-510.
Europe PMC