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Staff at EMBL

Jens Roat Kultima

Predoctoral Fellow
Bork Group

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Tentacle cnidae of the sea anemone Metridium senile.
C. Östman, J. Roat Kultima, C. Roat. (Linnaeus, 1761) (Cnidaria: Anthozoa). Sci. Mar. 74(3): 511-521. (IF 1.515).

Classification and quantification of bacteriophage taxa in human gut metagenomes. Waller, A.S., Yamada, T., Kristensen, D.M., Kultima, J.R., Sunagawa, S., Koonin, E.V. & Bork, P. ISME J. 2014 Mar 13. doi: 10.1038/ismej.2014.30. Europe PMC

Metagenomic species profiling using universal phylogenetic marker genes. Sunagawa, S., Mende, D.R., Zeller, G., Izquierdo-Carrasco, F., Berger, S.A., Kultima, J.R., Coelho, L.P., Arumugam, M., Tap, J., Nielsen, H.B., Rasmussen, S., Brunak, S., Pedersen, O., Guarner, F., de Vos, W.M., Wang, J., Li, J., Dore, J., Ehrlich, S.D., Stamatakis, A. & Bork, P. Nat Methods. 2013 Dec;10(12):1196-9. doi: 10.1038/nmeth.2693. Epub 2013 Oct 20. Europe PMC

Cnidae in the sea anemone Sagartiogeton viduatus (Muller, 1776) (Cnidaria, Anthozoa); A comparison to cnidae in the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria, Anthozoa). Östman, C., Borg, F., Roat, C., Roat Kultima, J. & Wong, S. Y. G. Acta Zoologica 2013 94(4) 392-409

Country-specific antibiotic use practices impact the human gut resistome. Forslund, K., Sunagawa, S., Kultima, J.R., Mende, D.R., Arumugam, M., Typas, A. & Bork, P. Genome Res. 2013 Jul;23(7):1163-9. doi: 10.1101/gr.155465.113. Epub 2013 Apr 8. Europe PMC

Genomic variation landscape of the human gut microbiome. Schloissnig, S., Arumugam, M., Sunagawa, S., Mitreva, M., Tap, J., Zhu, A., Waller, A., Mende, D.R., Kultima, J.R., Martin, J., Kota, K., Sunyaev, S.R., Weinstock, G.M. & Bork, P. Nature. 2013 Jan 3;493(7430):45-50. doi: 10.1038/nature11711. Epub 2012 Dec 5. Europe PMC

MOCAT: a metagenomics assembly and gene prediction toolkit. Kultima, J.R., Sunagawa, S., Li, J., Chen, W., Chen, H., Mende, D.R., Arumugam, M., Pan, Q., Liu, B., Qin, J., Wang, J. & Bork, P. PLoS One. 2012;7(10):e47656. doi: 10.1371/journal.pone.0047656. Epub 2012 Oct 17. Europe PMC

Tracking mesenchymal stem cells with iron oxide nanoparticle loaded poly(lactide-co-glycolide) microparticles. Xu, C., Miranda-Nieves, D., Ankrum, J.A., Matthiesen, M.E., Phillips, J.A., Roes, I., Wojtkiewicz, G.R., Juneja, V., Kultima, J.R., Zhao, W., Vemula, P.K., Lin, C.P., Nahrendorf, M. & Karp, J.M. Nano Lett. 2012 Aug 8;12(8):4131-9. Epub 2012 Jul 12. Europe PMC

genoPlotR: comparative gene and genome visualization in R. Guy, L., Kultima, J.R. & Andersson, S.G. Bioinformatics. 2010 Sep 15;26(18):2334-5. Epub 2010 Jul 11. Europe PMC

Dart formation in nematocysts of the sea anemone Metridium senile (Linnaeus, 1761) (Cnidaria: Anthozoa). Östman, C., Roat Kultima, J. & Wong, S. Y. G. Sci. Mar. 74(3): 499-510. (IF 1.515)

Acontia and mesentery nematocysts of the sea anemone Metridium senile. C. Östman, J. Roat Kultima, C. Roat, K. Rundblom (Linnaeus, 1761) (Cnidaria: Anthozoa). Sci. Mar. 74(3): 483-497. (IF 1.515)