EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Total: 13 publication(s)


Kultima JR, Coelho LP, Forslund K, Huerta-Cepas J, Li SS, Driessen M, Voigt AY, Zeller G, Sunagawa S, Bork P. (2016)

MOCAT2: a metagenomic assembly, annotation and profiling framework.

Bioinformatics doi: 10.1093/bioinformatics/btw183
Europe PMC | doi


Voigt AY, Costea PI, Kultima JR, Li SS, Zeller G, Sunagawa S, Bork P. (2015)

Temporal and technical variability of human gut metagenomes.

Genome Biol. 16(1) doi: 10.1186/s13059-015-0639-8
Europe PMC | doi


Schramm SJ, Jayaswal V, Goel A, Li SS, Yang YH, Mann GJ, Wilkins MR. (2013)

Molecular interaction networks for the analysis of human disease: utility, limitations, and considerations.

Proteomics 13(23-24):3393-3405. doi: 10.1002/pmic.201200570
Europe PMC | doi

Schramm SJ, Li SS, Jayaswal V, Fung DC, Campain AE, Pang CN, Scolyer RA, Yang YH, Mann GJ, Wilkins MR. (2013)

Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden.

Pigment Cell Melanoma Res 26(5):708-722. doi: 10.1111/pcmr.12126
Europe PMC | doi


Pang CN, Goel A, Li SS, Wilkins MR. (2012)

A multidimensional matrix for systems biology research and its application to interaction networks.

J. Proteome Res. 11(11):5204-5220. doi: 10.1021/pr300405y
Europe PMC | doi

Fung DC, Li SS, Goel A, Hong SH, Wilkins MR. (2012)

Visualization of the interactome: what are we looking at?

Proteomics 12(10):1669-1686. doi: 10.1002/pmic.201100454
Europe PMC | doi


Ayer A, Fellermeier S, Fife C, Li SS, Smits G, Meyer AJ, Dawes IW, Perrone GG. (2011)

A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis.

PLoS ONE 7(9) doi: 10.1371/journal.pone.0044278
Europe PMC | doi

Chong HS, Campbell L, Padula MP, Hill C, Harry E, Li SS, Wilkins MR, Herbert B, Carter D. (2011)

Time-course proteome analysis reveals the dynamic response of Cryptococcus gattii cells to fluconazole.

PLoS ONE 7(8) doi: 10.1371/journal.pone.0042835
Europe PMC | doi

Li SS, Xu K, Wilkins MR. (2011)

Visualization and analysis of the complexome network of Saccharomyces cerevisiae.

J. Proteome Res. 10(10):4744-4756. doi: 10.1021/pr200548c
Europe PMC | doi

Goel A, Li SS, Wilkins MR. (2011)

Four-dimensional visualisation and analysis of protein-protein interaction networks.

Proteomics 11(13):2672-2682. doi: 10.1002/pmic.201000546
Europe PMC | doi


Deshpande NP, Kaakoush NO, Mitchell H, Janitz K, Raftery MJ, Li SS, Wilkins MR. (2010)

Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity.

PLoS ONE 6(7) doi: 10.1371/journal.pone.0022170
Europe PMC | doi

Ma L, Pang CN, Li SS, Wilkins MR. (2010)

Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance.

J. Proteome Res. 9(3):1218-1225. doi: 10.1021/pr900693e
Europe PMC | doi


Widjaja YY, Pang CN, Li SS, Wilkins MR, Lambert TD. (2009)

The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3-D cell.

Proteomics 9(23):5309-5315. doi: 10.1002/pmic.200900260
Europe PMC | doi