EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: Send a mail

Publications

Total: 6 publication(s)

2016

Kultima JR, Coelho LP, Forslund K, Huerta-Cepas J, Li SS, Driessen M, Voigt AY, Zeller G, Sunagawa S, Bork P. (2016)

MOCAT2: a metagenomic assembly, annotation and profiling framework.

Bioinformatics doi: 10.1093/bioinformatics/btw183
Europe PMC | doi

Guidi L, Chaffron S, Bittner L, Eveillard D, Larhlimi A, Roux S, Darzi Y, Audic S, Berline L, Brum J, Coelho LP, Espinoza JC, Malviya S, Sunagawa S, Dimier C, Kandels-Lewis S, Picheral M, Poulain J, Searson S, Tara Oceans Consortium Coordinators, Stemmann L, Not F, Hingamp P, Speich S, Follows M, Karp-Boss L, Boss E, Ogata H, Pesant S, Weissenbach J, Wincker P, Acinas SG, Bork P, de Vargas C, Iudicone D, Sullivan MB, Raes J, Karsenti E, Bowler C, Gorsky G. (2016)

Plankton networks driving carbon export in the oligotrophic ocean.

Nature doi: 10.1038/nature16942
Europe PMC | doi


2015

Coelho LP, Pato C, Friaes A, Neumann A, von Kockritz-Blickwede M, Ramirez M, Carrico JA. (2015)

Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images

Bioinformatics 31(14):2364-2370. doi: 10.1093/bioinformatics/btv156
Europe PMC | doi

Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P. (2015)

Ocean plankton. Structure and function of the global ocean microbiome.

Science 348(6237) doi: 10.1126/science.1261359
Europe PMC | doi


2014

Forslund K, Sunagawa S, Coelho LP, Bork P. (2014)

Metagenomic insights into the human gut resistome and the forces that shape it

Bioessays 36(3):316-329. doi: 10.1002/bies.201300143
Europe PMC | doi


2013

Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, Wang J, Li J, Doré J, Ehrlich SD, Stamatakis A, Bork P. (2013)

Metagenomic species profiling using universal phylogenetic marker genes

Nat. Methods 10(12):1196-1199. doi: 10.1038/nmeth.2693
Europe PMC | doi