EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Publications

Total: 9 publication(s)

2016

Pedersen HK, Gudmundsdottir V, Nielsen HB, Hyotylainen T, Nielsen T, Jensen BA, Forslund K, Hildebrand F, Prifti E, Falony G, Le Chatelier E, Levenez F, Doré J, Mattila I, Plichta DR, Pöhö P, Hellgren LI, Arumugam M, Sunagawa S, Vieira-Silva S, Jørgensen T, Holm JB, Trošt K, Consortium M, Kristiansen K, Brix S, Raes J, Wang J, Hansen T, Bork P, Brunak S, Oresic M, Ehrlich SD, Pedersen O. (2016)

Human gut microbes impact host serum metabolome and insulin sensitivity.

Nature (535):376-381. doi: 10.1038/nature18646
Europe PMC | doi

Noguera-Julian M, Rocafort M, Guillén Y, Rivera J, Casadellà M, Nowak P, Hildebrand F, Zeller G, Parera M, Bellido R, Rodríguez C, Carrillo J, Mothe B, Coll J, Bravo I, Estany C, Herrero C, Saz J, Sirera G, Torrela A, Navarro J, Crespo M, Brander C, Negredo E, Blanco J, Guarner F, Calle ML, Bork P, Sönnerborg A, Clotet B, Paredes R. (2016)

Gut Microbiota Linked to Sexual Preference and HIV Infection.

EBioMedicine 5:135-146. doi: 10.1016/j.ebiom.2016.01.032
Europe PMC | doi


2015

Forslund K, Hildebrand F, Nielsen T, Falony G, Le Chatelier E, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Krogh Pedersen H, Arumugam M, Kristiansen K, Voigt AY, Vestergaard H, Hercog R, Igor Costea P, Kultima JR, Li J, Jørgensen T, Levenez F, Dore J, MetaHIT consortium, Nielsen HB, Brunak S, Raes J, Hansen T, Wang J, Ehrlich SD, Bork P, Pedersen O. (2015)

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.

Nature 528(7581):262-266. doi: 10.1038/nature15766
Europe PMC | doi

Tedersoo L, Bahram M, Polme S, Anslan S, Riit T, Koljalg U, Nilsson RH, Hildebrand F, Abarenkov K. (2015)

Response to Comment on "Global diversity and geography of soil fungi"

Science 349(6251) doi: 10.1126/science.aaa5594
Europe PMC | doi

Tedersoo L, Anslan S, Bahram M, Polme S, Riit T, Liiv I, Koljalg U, Kisand V, Nilsson RH, Hildebrand F, Bork P, Abarenkov K. (2015)

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

MycoKeys (10):1-43. doi: 10.3897/mycokeys.10.4852
doi

Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S, Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P. (2015)

Ocean plankton. Structure and function of the global ocean microbiome.

Science 348(6237) doi: 10.1126/science.1261359
Europe PMC | doi


2014

Kleinteich J, Hildebrand F, Wood SA, Cires S, Agha R, Quesada A, Pearce DA, Convey P, Kupper FC, Dietrich DR. (2014)

Diversity of toxin and non-toxin containing cyanobacterial mats of meltwater ponds on the Antarctic Peninsula: a pyrosequencing approach

ANTARCT SCI 26(5):521-532. doi: 10.1017/S0954102014000145
doi

Hildebrand F, Tadeo R, Voigt AY, Bork P, Raes J. (2014)

LotuS: an efficient and user-friendly OTU processing pipeline.

Microbiome 2:30. doi: 10.1186/2049-2618-2-30
Europe PMC | doi

Dingemans J, Ye L, Hildebrand F, Tontodonati F, Craggs M, Bilocq F, De Vos D, Crabbé A, Van Houdt R, Malfroot A, Cornelis P. (2014)

The deletion of TonB-dependent receptor genes is part of the genome reduction process that occurs during adaptation of Pseudomonas aeruginosa to the cystic fibrosis lung.

Pathog Dis 71(1):26-38. doi: 10.1111/2049-632x.12170
Europe PMC | doi