EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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  • PhD 1984, Cambridge University.
    Postdoctoral research at the Laboratory of Molecular Biology, Cambridge.
    At EMBL since 1986.
    Team leader at EMBL since 1996.


Total: 89 publication(s)


Dinkel H, Van Roey K, Michael S, Kumar M, Uyar B, Altenberg B, Milchevskaya V, Schneider M, Kühn H, Behrendt A, Dahl SL, Damerell V, Diebel S, Kalman S, Klein S, Knudsen AC, Mäder C, Merrill S, Staudt A, Thiel V, Welti L, Davey NE, Diella F, Gibson TJ. (2016)

ELM 2016-data update and new functionality of the eukaryotic linear motif resource.

Nucleic Acids Res 44(D1):D294-300. doi:10.1093/nar/gkv1291
Europe PMC | doi


Gibson TJ, Dinkel H, Van Roey K, Diella F. (2015)

Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad.

Cell Commun. Signal 13(1) doi:10.1186/s12964-015-0121-y
Europe PMC | doi

Dona M, Bachmann-Gagescu R, Texier Y, Toedt G, Hetterschijt L, Tonnaer EL, Peters TA, van Beersum SE, Bergboer JG, Horn N, de Vrieze E, Slijkerman RW, van Reeuwijk J, Flik G, Keunen JE, Ueffing M, Gibson TJ, Roepman R, Boldt K, Kremer H, van Wijk E. (2015)

NINL and DZANK1 Co-function in Vesicle Transport and Are Essential for Photoreceptor Development in Zebrafish.

PLoS Genet. 11(10) doi:10.1371/journal.pgen.1005574
Europe PMC | doi

Wheway G, Schmidts M, Mans DA, Szymanska K, Nguyen TT, Racher H, Phelps IG, Toedt G, Kennedy J, Wunderlich KA, Sorusch N, Abdelhamed ZA, Natarajan S, Herridge W, van Reeuwijk J, Horn N, Boldt K, Parry DA, Letteboer SJ, Roosing S, Adams M, Bell SM, Bond J, Higgins J, Morrison EE, Tomlinson DC, Slaats GG, van Dam TJ, Huang L, Kessler K, Giessl A, Logan CV, Boyle EA, Shendure J, Anazi S, Aldahmesh M, Al Hazzaa S, Hegele RA, Ober C, Frosk P, Mhanni AA, Chodirker BN, Chudley AE, Lamont R, Bernier FP, Beaulieu CL, Gordon P, Pon RT, Donahue C, Barkovich AJ, Wolf L, Toomes C, Thiel CT, Boycott KM, McKibbin M, Inglehearn CF, UK10K Consortium, University of Washington Center for Mendelian Genomics, Stewart F, Omran H, Huynen MA, Sergouniotis PI, Alkuraya FS, Parboosingh JS, Innes AM, Willoughby CE, Giles RH, Webster AR, Ueffing M, Blacque O, Gleeson JG, Wolfrum U, Beales PL, Gibson T, Doherty D, Mitchison HM, Roepman R, Johnson CA. (2015)

An siRNA-based functional genomics screen for the identification of regulators of ciliogenesis and ciliopathy genes.

Nat. Cell Biol. doi:10.1038/ncb3201
Europe PMC | doi

Di Fiore B, Davey NE, Hagting A, Izawa D, Mansfeld J, Gibson TJ, Pines J. (2015)

The ABBA Motif Binds APC/C Activators and Is Shared by APC/C Substrates and Regulators.

Dev. Cell 32(3):358-372. doi:10.1016/j.devcel.2015.01.003
Europe PMC | doi


Thimiri Govinda Raj DB, Garzoni F, Gavin AC, Gibson T, Berger I. (2014)

FEBS-EMBO Concurrent Session (lecture): CS III-6-3 SynBac: designer minimal baculovirus genome for drug discovery.

Paper presented at the FEBS EMBO 2014 Conference, Paris, France, 30 August-4 September 2014. FEBS J. 281(S1):9-55. doi:10.1111/febs.12917

Weatheritt RJ, Gibson TJ, Babu MM. (2014)

Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems

Nat. Struct. Mol. Biol. 21(9):833-839. doi:10.1038/nsmb.2876
Europe PMC | doi

Tompa P, Davey NE, Gibson TJ, Babu MM. (2014)

A million peptide motifs for the molecular biologist

Mol. Cell 55(2):161-169. doi:10.1016/j.molcel.2014.05.032
Europe PMC | doi

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ. (2014)

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Mol Biosyst 10:2626-2642. doi:10.1039/c4mb00290c
Europe PMC | doi

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE. (2014)

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Chem. Rev. 114(13):6733-6778. doi:10.1021/cr400585q
Europe PMC | doi

Texier Y, Toedt G, Gorza M, Mans DA, van Reeuwijk J, Horn N, Willer J, Katsanis N, Roepman R, Gibson TJ, Ueffing M, Boldt K. (2014)

Elution profile analysis of SDS-induced subcomplexes by quantitative mass spectrometry.

Mol. Cell Proteomics 13(5):1382-1391. doi:10.1074/mcp.o113.033233
Europe PMC | doi

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ. (2014)

The eukaryotic linear motif resource ELM: 10 years and counting

Nucleic Acids Res. 42(Database issue):D259-66. doi:10.1093/nar/gkt1047
Europe PMC | doi


Reyes A, Anders S, Weatheritt RJ, Gibson TJ, Steinmetz LM, Huber W. (2013)

Drift and conservation of differential exon usage across tissues in primate species

Proc. Natl. Acad. Sci. U.S.A. 110(38):15377-15382. doi:10.1073/pnas.1307202110
Europe PMC | doi

Gibson TJ, Seiler M, Veitia RA. (2013)

The transience of transient overexpression

Nat. Methods 10(8):715-721. doi:10.1038/nmeth.2534
Europe PMC | doi

Van Roey K, Dinkel H, Weatheritt RJ, Gibson TJ, Davey NE. (2013)

The switches.ELM resource: a compendium of conditional regulatory interaction interfaces

Sci Signal 6(269):rs7. doi:10.1126/scisignal.2003345
Europe PMC | doi

Van Roey K, Orchard S, Kerrien S, Dumousseau M, Ricard-Blum S, Hermjakob H, Gibson TJ. (2013)

Capturing cooperative interactions with the PSI-MI format

Database (Oxford) 2013:bat066. doi:10.1093/database/bat066
Europe PMC | doi


Davey NE, Cowan JL, Shields DC, Gibson TJ, Coldwell MJ, Edwards RJ. (2012)

SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions

Nucleic Acids Res. 40(21):10628-10641. doi:10.1093/nar/gks854
Europe PMC | doi

Jiang K, Toedt G, Montenegro Gouveia S, Davey NE, Hua S, van der Vaart B, Grigoriev I, Larsen J, Pedersen LB, Bezstarosti K, Lince-Faria M, Demmers J, Steinmetz MO, Gibson TJ, Akhmanova A. (2012)

A Proteome-wide screen for mammalian SxIP motif-containing microtubule plus-end tracking proteins

Curr. Biol. 22(19):1800-1807. doi:10.1016/j.cub.2012.07.047
Europe PMC | doi

Gibson TJ. (2012)

RACK1 research - ships passing in the night?

FEBS Lett. 586(17):2787-2789. doi:10.1016/j.febslet.2012.04.048
Europe PMC | doi

Weatheritt RJ, Davey NE, Gibson TJ. (2012)

Linear motifs confer functional diversity onto splice variants

Nucleic Acids Res. 40(15):7123-7131. doi:10.1093/nar/gks442
Europe PMC | doi

Weatheritt RJ, Gibson TJ. (2012)

Linear motifs: lost in (pre)translation

Trends Biochem. Sci. 37(8):333-341. doi:10.1016/j.tibs.2012.05.001
Europe PMC | doi

Weatheritt RJ, Jehl P, Dinkel H, Gibson TJ. (2012)

iELM--a web server to explore short linear motif-mediated interactions

Nucleic Acids Res. 40(Web Server issue):W364-9. doi:10.1093/nar/gks444
Europe PMC | doi

Kiesel P, Bodemer W, Gibson T, Zischler H, Kaup FJ. (2012)

Prion infected rhesus monkeys to study differential transcription of Alu DNA elements and editing of Alu transcripts in neuronal cells and blood cells

J. Med. Primatol. 41(3):176-182. doi:10.1111/j.1600-0684.2012.00535.x
Europe PMC | doi

Van Roey K, Gibson TJ, Davey NE. (2012)

Motif switches: decision-making in cell regulation

Curr. Opin. Struct. Biol. 22(3):378-385. doi:10.1016/j.sbi.2012.03.004
Europe PMC | doi

Weatheritt RJ, Luck K, Petsalaki E, Davey NE, Gibson TJ. (2012)

The identification of short linear motif-mediated interfaces within the human interactome

Bioinformatics 28(7):976-982. doi:10.1093/bioinformatics/bts072
Europe PMC | doi

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ. (2012)

Attributes of short linear motifs

Mol Biosyst 8(1):268-281. doi:10.1039/c1mb05231d
Europe PMC | doi

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. (2012)

ELM--the database of eukaryotic linear motifs

Nucleic Acids Res. 40(Database issue):D242-51. doi:10.1093/nar/gkr1064
Europe PMC | doi

Kiesel P, Kues A, Kaup FJ, Bodemer W, Gibson TJ, Zischler H. (2012)

A comparative analysis to study editing of small noncoding BC200- and Alu transcripts in brain of prion-inoculated rhesus monkeys (M. Mulatta)

J. Toxicol. Environ. Health Part A 75(7):391-401. doi:10.1080/15287394.2012.670896
Europe PMC | doi


Davey NE, Travé G, Gibson TJ. (2011)

How viruses hijack cell regulation

Trends Biochem. Sci. 36(3):159-169. doi:10.1016/j.tibs.2010.10.002
Europe PMC | doi

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F. (2011)

Phospho.ELM: a database of phosphorylation sites--update 2011

Nucleic Acids Res. 39(Database issue):D261-7. doi:10.1093/nar/gkq1104
Europe PMC | doi

Kiesel P, Gibson TJ, Ciesielczyk B, Bodemer M, Kaup FJ, Bodemer W, Zischler H, Zerr I. (2011)

Possible editing of Alu transcripts in blood cells of sporadic Creutzfeldt-Jakob disease (sCJD)

J. Toxicol. Environ. Health Part A 74(2-4):88-95. doi:10.1080/15287394.2011.529057
Europe PMC | doi

Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG. (2011)

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

Mol. Syst. Biol. 7:539. doi:10.1038/msb.2011.75
Europe PMC | doi

Via A, Diella F, Gibson TJ, Helmer-Citterich M. (2011)

From sequence to structural analysis in protein phosphorylation motifs

Front Biosci (Landmark Ed) 16:1261-1275. doi:10.2741/3787
Europe PMC | doi


Croset V, Rytz R, Cummins SF, Budd A, Brawand D, Kaessmann H, Gibson TJ, Benton R. (2010)

Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction

PLoS Genet. 6(8):e1001064. doi:10.1371/journal.pgen.1001064
Europe PMC | doi

Haslam NJ, Gibson TJ. (2010)

EpiC: an open resource for exploring epitopes to aid antibody-based experiments

J. Proteome Res. 9(7):3759-3763. doi:10.1021/pr100029f
Europe PMC | doi

Gloriam DE, Orchard S, Bertinetti D, Björling E, Bongcam-Rudloff E, Borrebaeck CA, Bourbeillon J, Bradbury AR, de Daruvar A, Dübel S, Frank R, Gibson TJ, Gold L, Haslam N, Herberg FW, Hiltke T, Hoheisel JD, Kerrien S, Koegl M, Konthur Z, Korn B, Landegren U, Montecchi-Palazzi L, Palcy S, Rodriguez H, Schweinsberg S, Sievert V, Stoevesandt O, Taussig MJ, Ueffing M, Uhlén M, van der Maarel S, Wingren C, Woollard P, Sherman DJ, Hermjakob H. (2010)

A community standard format for the representation of protein affinity reagents

Mol. Cell Proteomics 9(1):1-10. doi:10.1074/mcp.m900185-mcp200
Europe PMC | doi

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ. (2010)

ELM: the status of the 2010 eukaryotic linear motif resource

Nucleic Acids Res. 38(Database issue):D167-80. doi:10.1093/nar/gkp1016
Europe PMC | doi

Kiesel P, Gibson TJ, Ciesielczyk B, Bodemer M, Kaup FJ, Bodemer W, Zischler H, Zerr I. (2010)

Transcription of Alu DNA elements in blood cells of sporadic Creutzfeldt-Jakob disease (sCJD)

Prion 4(2):87-93. doi:10.4161/pri.4.2.11965
Europe PMC | doi


Gibson TJ. (2009)

Cell regulation: determined to signal discrete cooperation

Trends Biochem. Sci. 34(10):471-482. doi:10.1016/j.tibs.2009.06.007
Europe PMC | doi

Chica C, Diella F, Gibson TJ. (2009)

Evidence for the concerted evolution between short linear protein motifs and their flanking regions

PLoS ONE 4(7):e6052. doi:10.1371/journal.pone.0006052
Europe PMC | doi

Corsini L, Hothorn M, Stier G, Rybin V, Scheffzek K, Gibson TJ, Sattler M. (2009)

Dimerization and protein binding specificity of the U2AF homology motif of the splicing factor Puf60

J. Biol. Chem. 284(1):630-639. doi:10.1074/jbc.m805395200
Europe PMC | doi

de Chiara C, Menon RP, Strom M, Gibson TJ, Pastore A. (2009)

Phosphorylation of S776 and 14-3-3 binding modulate ataxin-1 interaction with splicing factors

PLoS ONE 4(12):e8372. doi:10.1371/journal.pone.0008372
Europe PMC | doi

Diella F, Chabanis S, Luck K, Chica C, Ramu C, Nerlov C, Gibson TJ. (2009)

KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors

Bioinformatics 25(1):1-5. doi:10.1093/bioinformatics/btn594
Europe PMC | doi

Via A, Gould CM, Gemünd C, Gibson TJ, Helmer-Citterich M. (2009)

A structure filter for the Eukaryotic Linear Motif Resource

BMC Bioinformatics 10:351. doi:10.1186/1471-2105-10-351
Europe PMC | doi


Schallus T, Jaeckh C, Fehér K, Palma AS, Liu Y, Simpson JC, Mackeen M, Stier G, Gibson TJ, Feizi T, Pieler T, Muhle-Goll C. (2008)

Malectin: a novel carbohydrate-binding protein of the endoplasmic reticulum and a candidate player in the early steps of protein N-glycosylation

Mol. Biol. Cell 19(8):3404-3414. doi:10.1091/mbc.e08-04-0354
Europe PMC | doi

Russell RB, Gibson TJ. (2008)

A careful disorderliness in the proteome: sites for interaction and targets for future therapies

Paper presented at the Conference on Targeting and Tinkering with Interaction Networks, Barcelona, SPAIN, APR 14-16, 2008. FEBS Lett. 582(8):1271-1275. doi:10.1016/j.febslet.2008.02.027
Europe PMC | doi

Michael S, Travé G, Ramu C, Chica C, Gibson TJ. (2008)

Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation

Bioinformatics 24(4):453-457. doi:10.1093/bioinformatics/btm624
Europe PMC | doi

Chica C, Labarga A, Gould CM, López R, Gibson TJ. (2008)

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

BMC Bioinformatics 9:229. doi:10.1186/1471-2105-9-229
Europe PMC | doi

Diella F, Gould CM, Chica C, Via A, Gibson TJ. (2008)

Phospho.ELM: a database of phosphorylation sites--update 2008

Nucleic Acids Res. 36(Database issue):D240-4. doi:10.1093/nar/gkm772
Europe PMC | doi

Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ. (2008)

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

Front. Biosci. 13:6580-6603. doi:10.2741/3175
Europe PMC | doi

Perrodou E, Chica C, Poch O, Gibson TJ, Thompson JD. (2008)

A new protein linear motif benchmark for multiple sequence alignment software

BMC Bioinformatics 9:213. doi:10.1186/1471-2105-9-213
Europe PMC | doi


Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. (2007)

Clustal W and Clustal X version 2.0

Bioinformatics 23(21):2947-2948. doi:10.1093/bioinformatics/btm404
Europe PMC | doi

Taussig MJ, Stoevesandt O, Borrebaeck CA, Bradbury AR, Cahill D, Cambillau C, de Daruvar A, Dübel S, Eichler J, Frank R, Gibson TJ, Gloriam D, Gold L, Herberg FW, Hermjakob H, Hoheisel JD, Joos TO, Kallioniemi O, Koegl M, Konthur Z, Korn B, Kremmer E, Krobitsch S, Landegren U, van der Maarel S, McCafferty J, Muyldermans S, Nygren PA, Palcy S, Plückthun A, Polic B, Przybylski M, Saviranta P, Sawyer A, Sherman DJ, Skerra A, Templin M, Ueffing M, Uhlén M. (2007)

ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome

Nat. Methods 4(1):13-17. doi:10.1038/nmeth0107-13
Europe PMC | doi


Neduva V, Linding R, Su-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB. (2005)

Systematic discovery of new recognition peptides mediating protein interaction networks

PLoS Biol. 3(12):e405. doi:10.1371/journal.pbio.0030405
Europe PMC | doi

Michel K, Budd A, Pinto S, Gibson TJ, Kafatos FC. (2005)

Anopheles gambiae SRPN2 facilitates midgut invasion by the malaria parasite Plasmodium berghei

EMBO Rep. 6(9):891-897. doi:10.1038/sj.embor.7400478
Europe PMC | doi


McEntyre JR, Gibson TJ. (2004)

Patterns and clusters within the PSM column in TiBS, 1992-2004

Trends Biochem. Sci. 29(12):627-633. doi:10.1016/j.tibs.2004.10.006
Europe PMC | doi

Menon RP, Gibson TJ, Pastore A. (2004)

The C terminus of fragile X mental retardation protein interacts with the multi-domain Ran-binding protein in the microtubule-organising centre

J. Mol. Biol. 343(1):43-53. doi:10.1016/j.jmb.2004.08.024
Europe PMC | doi

Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ. (2004)

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

BMC Bioinformatics 5:79. doi:10.1186/1471-2105-5-79
Europe PMC | doi

Ragvin A, Valvatne H, Erdal S, Arskog V, Tufteland KR, Breen K, ØYan AM, Eberharter A, Gibson TJ, Becker PB, Aasland R. (2004)

Nucleosome binding by the bromodomain and PHD finger of the transcriptional cofactor p300

J. Mol. Biol. 337(4):773-788. doi:10.1016/j.jmb.2004.01.051
Europe PMC | doi

Budd A, Blandin S, Levashina EA, Gibson TJ. (2004)

Bacterial alpha2-macroglobulins: colonization factors acquired by horizontal gene transfer from the metazoan genome?

Genome Biol. 5(6):R38. doi:10.1186/gb-2004-5-6-r38
Europe PMC | doi


Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. (2003)

Protein disorder prediction: implications for structural proteomics

Structure 11(11):1453-1459. doi:10.1016/j.str.2003.10.002
Europe PMC | doi

Bimpikis K, Budd A, Linding R, Gibson TJ. (2003)

BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases

Nucleic Acids Res. 31(13):3792-3794. doi:10.1093/nar/gkg535
Europe PMC | doi

Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. (2003)

Multiple sequence alignment with the Clustal series of programs

Nucleic Acids Res. 31(13):3497-3500. doi:10.1093/nar/gkg500
Europe PMC | doi

Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ. (2003)

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

Nucleic Acids Res. 31(13):3625-3630. doi:10.1093/nar/gkg545
Europe PMC | doi


Huynen MA, Snel B, Bork P, Gibson TJ. (2001)

The phylogenetic distribution of frataxin indicates a role in iron-sulfur cluster protein assembly

Hum. Mol. Genet. 10(21):2463-2468. doi:10.1093/hmg/10.21.2463
Europe PMC | doi

Moreira MC, Barbot C, Tachi N, Kozuka N, Uchida E, Gibson T, Mendonça P, Costa M, Barros J, Yanagisawa T, Watanabe M, Ikeda Y, Aoki M, Nagata T, Coutinho P, Sequeiros J, Koenig M. (2001)

The gene mutated in ataxia-ocular apraxia 1 encodes the new HIT/Zn-finger protein aprataxin

Nat. Genet. 29(2):189-193. doi:10.1038/ng1001-189
Europe PMC | doi

Bottomley MJ, Collard MW, Huggenvik JI, Liu Z, Gibson TJ, Sattler M. (2001)

The SAND domain structure defines a novel DNA-binding fold in transcriptional regulation

Nat. Struct. Biol. 8(7):626-633. doi:10.1038/89675
Europe PMC | doi

Gemünd C, Ramu C, Altenberg-Greulich B, Gibson TJ. (2001)

Gene2EST: a BLAST2 server for searching expressed sequence tag (EST) databases with eukaryotic gene-sized queries

Nucleic Acids Res. 29(6):1272-1277. doi:10.1093/nar/29.6.1272
Europe PMC | doi

Gibson TJ. (2001)

RuNAway Disease: A two cycle model for transmissible spongiform encephalopathies (TSEs) wherein SINE proliferation drives PrP overproduction

Genome Biol. 2(7):Preprint 0006. doi:10.1186/gb-2001-2-7-preprint0006
Europe PMC | doi


Hill F, Gemünd C, Benes V, Ansorge W, Gibson TJ. (2000)

An estimate of large-scale sequencing accuracy

EMBO Rep. 1(1):29-31. doi:10.1093/embo-reports/kvd015
Europe PMC | doi

Ramu C, Gemünd C, Gibson TJ. (2000)

Object-oriented parsing of biological databases with Python

Bioinformatics 16(7):628-638. doi:10.1093/bioinformatics/16.7.628
Europe PMC | doi

Andrade MA, Ponting CP, Gibson TJ, Bork P. (2000)

Homology-based method for identification of protein repeats using statistical significance estimates

J. Mol. Biol. 298(3):521-537. doi:10.1006/jmbi.2000.3684
Europe PMC | doi

Gibson TJ, Spring J. (2000)

Evidence in favour of ancient octaploidy in the vertebrate genome

Paper presented at the Colloquium on Evolution of Sequences, Structures and Genomes, CORK, IRELAND, SEP 07-09, 1999. Biochem. Soc. Trans. 28(2):259-264.
Europe PMC


Musco G, de Tommasi T, Stier G, Kolmerer B, Bottomley M, Adinolfi S, Muskett FW, Gibson TJ, Frenkiel TA, Pastore A. (1999)

Assignment of the 1H, 15N, and 13C resonances of the C-terminal domain of frataxin, the protein responsible for Friedreich ataxia

J. Biomol. NMR 15(1):87-88. doi:10.1023/a:1008398832619
Europe PMC | doi

Zeller R, Haramis AG, Zuniga A, McGuigan C, Dono R, Davidson G, Chabanis S, Gibson T. (1999)

Formin defines a large family of morphoregulatory genes and functions in establishment of the polarising region

Cell Tissue Res. 296(1):85-93. doi:10.1007/s004410051269
Europe PMC | doi

Gibson T, Bork P. (1999)

Sequence analysis, dotplot, aligning sequences, indels and gap-penalty

In: Creighton T (ed.), Encyclopedia of Molecular Biology. Wiley & Sons Inc., New York. pp 86-90; 765-766; 961-962; 1252; 2220-2324.


Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ. (1998)

Multiple sequence alignment with Clustal X

Trends Biochem. Sci. 23(10):403-405. doi:10.1016/s0968-0004(98)01285-7
Europe PMC | doi

Lock P, Abram CL, Gibson T, Courtneidge SA. (1998)

A new method for isolating tyrosine kinase substrates used to identify fish, an SH3 and PX domain-containing protein, and Src substrate

EMBO J. 17(15):4346-4357. doi:10.1093/emboj/17.15.4346
Europe PMC | doi

Gibson TJ, Ramu C, Gemünd C, Aasland R. (1998)

The APECED polyglandular autoimmune syndrome protein, AIRE-1, contains the SAND domain and is probably a transcription factor

Trends Biochem. Sci. 23(7):242-244. doi:10.1016/s0968-0004(98)01231-6
Europe PMC | doi

Gibson TJ, Spring J. (1998)

Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins

Trends Genet. 14(2):46-9; discussion 49-50. doi:10.1016/s0168-9525(97)01367-x
Europe PMC | doi


Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997)

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

Nucleic Acids Res. 25(24):4876-4882. doi:10.1093/nar/25.24.4876
Europe PMC | doi


Birney E, Thompson JD, Gibson TJ. (1996)

PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames

Nucleic Acids Res. 24(14):2730-2739. doi:10.1093/nar/24.14.2730
Europe PMC | doi


Thompson JD, Higgins DG, Gibson TJ. (1994)

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Nucleic Acids Res. 22(22):4673-4680. doi:10.1093/nar/22.22.4673
Europe PMC | doi

Gibson TJ, Hyvönen M, Musacchio A, Saraste M, Birney E. (1994)

PH domain: the first anniversary.

Trends Biochem. Sci. 19(9):349-353. doi:10.1016/0968-0004(94)90108-2
Europe PMC | doi


Nardelli J, Gibson T, Charnay P. (1992)

Zinc finger-DNA recognition: analysis of base specificity by site-directed mutagenesis

Nucleic Acids Res. 20(16):4137-4144. doi:10.1093/nar/20.16.4137
Europe PMC | doi


Saudek V, Pastore A, Morelli MA, Frank R, Gausepohl H, Gibson T. (1991)

The solution structure of a leucine-zipper motif peptide

Protein Eng. 4(5):519-529. doi:10.1093/protein/4.5.519
Europe PMC | doi

Saudek V, Pasley HS, Gibson T, Gausepohl H, Frank R, Pastore A. (1991)

Solution structure of the basic region from the transcriptional activator GCN4

Biochemistry 30(5):1310-1317. doi:10.1021/bi00219a022
Europe PMC | doi


Saudek V, Pastore A, Castiglione Morelli MA, Frank R, Gausepohl H, Gibson T, Weih F, Roesch P. (1990)

Solution structure of the DNA-binding domain of the yeast transcriptional activator protein GCN4

Protein Eng. 4(1):3-10. doi:10.1093/protein/4.1.3
Europe PMC | doi

Labeit S, Barlow DP, Gautel M, Gibson T, Holt J, Hsieh CL, Francke U, Leonard K, Wardale J, Whiting A. (1990)

A regular pattern of two types of 100-residue motif in the sequence of titin

Nature 345(6272):273-276. doi:10.1038/345273a0
Europe PMC | doi