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Staff at EMBL

Holger Dinkel

Software Engineer
Gibson Team

EMBL Heidelberg, Meyerhofstra├če 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

The eukaryotic linear motif resource ELM: 10 years and counting. Dinkel, H., Van Roey, K., Michael, S., Davey, N.E., Weatheritt, R.J., Born, D., Speck, T., Kruger, D., Grebnev, G., Kuban, M., Strumillo, M., Uyar, B., Budd, A., Altenberg, B., Seiler, M., Chemes, L.B., Glavina, J., Sanchez, I.E., Diella, F. & Gibson, T.J. Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047.Epub 2013 Nov 7. Europe PMC

The switches.ELM resource: a compendium of conditional regulatory interaction interfaces. Van Roey, K., Dinkel, H., Weatheritt, R.J., Gibson, T.J. & Davey, N.E. Sci Signal. 2013 Apr 2;6(269):rs7. doi: 10.1126/scisignal.2003345. Europe PMC

Biggest challenges in bioinformatics. Fuller, J.C., Khoueiry, P., Dinkel, H., Forslund, K., Stamatakis, A., Barry, J., Budd, A., Soldatos, T.G., Linssen, K. & Rajput, A.M. EMBO Rep. 2013 Mar 15. doi: 10.1038/embor.2013.34. Europe PMC

iELM--a web server to explore short linear motif-mediated interactions. Weatheritt, R.J., Jehl, P., Dinkel, H. & Gibson, T.J. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W364-9. doi: 10.1093/nar/gks444.Epub 2012 May 25. Europe PMC

Attributes of short linear motifs. Davey, N.E., Van Roey, K., Weatheritt, R.J., Toedt, G., Uyar, B., Altenberg, B., Budd, A., Diella, F., Dinkel, H. & Gibson, T.J. Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12. Europe PMC

ELM--the database of eukaryotic linear motifs. Dinkel, H., Michael, S., Weatheritt, R.J., Davey, N.E., Van Roey, K., Altenberg, B., Toedt, G., Uyar, B., Seiler, M., Budd, A., Jodicke, L., Dammert, M.A., Schroeter, C., Hammer, M., Schmidt, T., Jehl, P., McGuigan, C., Dymecka, M., Chica, C., Luck, K., Via, A., Chatr-Aryamontri, A., Haslam, N., Grebnev, G., Edwards, R.J., Steinmetz, M.O., Meiselbach, H., Diella, F. & Gibson, T.J. Nucleic Acids Res. 2012 Jan 1;40(D1):D242-D251. Epub 2011 Nov 21. Europe PMC

Phospho.ELM: a database of phosphorylation sites--update 2011. Dinkel, H., Chica, C., Via, A., Gould, C.M., Jensen, L.J., Gibson, T.J. & Diella, F. Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. Epub 2010 Nov 9. Europe PMC

Intracellular localization map of human herpesvirus 8 proteins. Sander, G., Konrad, A., Thurau, M., Wies, E., Leubert, R., Kremmer, E., Dinkel, H., Schulz, T., Neipel, F. & Sturzl, M. J Virol. 2008 Feb;82(4):1908-22. Epub 2007 Dec 12. Europe PMC

A computational strategy for the prediction of functional linear peptide motifs in proteins. Dinkel, H. & Sticht, H. Bioinformatics. 2007 Dec 15;23(24):3297-303. Epub 2007 Oct 31. Europe PMC