Staff at EMBL
Holger Dinkel
Software Engineer
Gibson Team
EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
| E-mail: | send a mail |
|---|
Publications
Biggest challenges in bioinformatics. Fuller, J.C., Khoueiry, P., Dinkel, H., Forslund, K., Stamatakis, A., Barry, J., Budd, A., Soldatos, T.G., Linssen, K. & Rajput, A.M. EMBO Rep. 2013 Mar 15. doi: 10.1038/embor.2013.34. PubMed
iELM--a web server to explore short linear motif-mediated interactions. Weatheritt, R.J., Jehl, P., Dinkel, H. & Gibson, T.J. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W364-9. doi: 10.1093/nar/gks444.Epub 2012 May 25. PubMed
Attributes of short linear motifs. Davey, N.E., Van Roey, K., Weatheritt, R.J., Toedt, G., Uyar, B., Altenberg, B., Budd, A., Diella, F., Dinkel, H. & Gibson, T.J. Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12. PubMed
ELM--the database of eukaryotic linear motifs. Dinkel, H., Michael, S., Weatheritt, R.J., Davey, N.E., Van Roey, K., Altenberg, B., Toedt, G., Uyar, B., Seiler, M., Budd, A., Jodicke, L., Dammert, M.A., Schroeter, C., Hammer, M., Schmidt, T., Jehl, P., McGuigan, C., Dymecka, M., Chica, C., Luck, K., Via, A., Chatr-Aryamontri, A., Haslam, N., Grebnev, G., Edwards, R.J., Steinmetz, M.O., Meiselbach, H., Diella, F. & Gibson, T.J. Nucleic Acids Res. 2012 Jan 1;40(D1):D242-D251. Epub 2011 Nov 21. PubMed
Phospho.ELM: a database of phosphorylation sites--update 2011. Dinkel, H., Chica, C., Via, A., Gould, C.M., Jensen, L.J., Gibson, T.J. & Diella, F. Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. Epub 2010 Nov 9. PubMed
Intracellular localization map of human herpesvirus 8 proteins. Sander, G., Konrad, A., Thurau, M., Wies, E., Leubert, R., Kremmer, E., Dinkel, H., Schulz, T., Neipel, F. & Sturzl, M. J Virol. 2008 Feb;82(4):1908-22. Epub 2007 Dec 12. PubMed
A computational strategy for the prediction of functional linear peptide motifs in proteins. Dinkel, H. & Sticht, H. Bioinformatics. 2007 Dec 15;23(24):3297-303. Epub 2007 Oct 31. PubMed