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Staff at EMBL

CP-60010472

Holger Dinkel

Software Engineer
Gibson Team

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 11 publication(s)

2014

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ. (2014)
Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
Mol Biosyst 10(10):2626-2642. doi:10.1039/c4mb00290c
Europe PMC | doi

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE. (2014)
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation
Chem. Rev. 114(13):6733-6778. doi:10.1021/cr400585q
Europe PMC | doi

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ. (2014)
The eukaryotic linear motif resource ELM: 10 years and counting
Nucleic Acids Res. 42(Database issue):D259-66. doi:10.1093/nar/gkt1047
Europe PMC | doi


2013

Fuller JC, Khoueiry P, Dinkel H, Forslund K, Stamatakis A, Barry J, Budd A, Soldatos TG, Linssen K, Rajput AM, HUB Participants. (2013)
Biggest challenges in bioinformatics
EMBO Rep. 14(4):302-304. doi:10.1038/embor.2013.34
Europe PMC | doi

Van Roey K, Dinkel H, Weatheritt RJ, Gibson TJ, Davey NE. (2013)
The switches.ELM resource: a compendium of conditional regulatory interaction interfaces
Sci Signal 6(269):rs7. doi:10.1126/scisignal.2003345
Europe PMC | doi


2012

Weatheritt RJ, Jehl P, Dinkel H, Gibson TJ. (2012)
iELM--a web server to explore short linear motif-mediated interactions
Nucleic Acids Res. 40(Web Server issue):W364-9. doi:10.1093/nar/gks444
Europe PMC | doi

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ. (2012)
Attributes of short linear motifs
Mol Biosyst 8(1):268-281. doi:10.1039/c1mb05231d
Europe PMC | doi

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. (2012)
ELM--the database of eukaryotic linear motifs
Nucleic Acids Res. 40(Database issue):D242-51. doi:10.1093/nar/gkr1064
Europe PMC | doi


2011

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F. (2011)
Phospho.ELM: a database of phosphorylation sites--update 2011
Nucleic Acids Res. 39(Database issue):D261-7. doi:10.1093/nar/gkq1104
Europe PMC | doi


2008

Sander G, Konrad A, Thurau M, Wies E, Leubert R, Kremmer E, Dinkel H, Schulz T, Neipel F, Stürzl M. (2008)
Intracellular localization map of human herpesvirus 8 proteins
J. Virol. 82(4):1908-1922. doi:10.1128/jvi.01716-07
Europe PMC | doi


2007

Dinkel H, Sticht H. (2007)
A computational strategy for the prediction of functional linear peptide motifs in proteins
Bioinformatics 23(24):3297-3303. doi:10.1093/bioinformatics/btm524
Europe PMC | doi