EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Publications

Total: 13 publication(s)

2015

Budd A, Dinkel H, Corpas M, Fuller JC, Rubinat L, Devos DP, Khoueiry PH, Förstner KU, Georgatos F, Rowland F, Sharan M, Binder JX, Grace T, Traphagen K, Gristwood A, Wood NT. (2015)

Ten simple rules for organizing an unconference.

PLoS Comput. Biol. 11(1) doi:10.1371/journal.pcbi.1003905
Europe PMC | doi


2014

Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM, as part of the AllBio: Open Science & Reproducibility Best Practice Workshop. (2014)

The open science peer review oath.

F1000Res 3 doi:10.12688/f1000research.5686.1
Europe PMC | doi

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ. (2014)

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Mol Biosyst 10:2626-2642. doi:10.1039/c4mb00290c
Europe PMC | doi

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE. (2014)

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Chem. Rev. 114(13):6733-6778. doi:10.1021/cr400585q
Europe PMC | doi

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ. (2014)

The eukaryotic linear motif resource ELM: 10 years and counting

Nucleic Acids Res. 42(Database issue):D259-66. doi:10.1093/nar/gkt1047
Europe PMC | doi


2013

Fuller JC, Khoueiry P, Dinkel H, Forslund K, Stamatakis A, Barry J, Budd A, Soldatos TG, Linssen K, Rajput AM, HUB Participants. (2013)

Biggest challenges in bioinformatics

EMBO Rep. 14(4):302-304. doi:10.1038/embor.2013.34
Europe PMC | doi

Van Roey K, Dinkel H, Weatheritt RJ, Gibson TJ, Davey NE. (2013)

The switches.ELM resource: a compendium of conditional regulatory interaction interfaces

Sci Signal 6(269):rs7. doi:10.1126/scisignal.2003345
Europe PMC | doi


2012

Weatheritt RJ, Jehl P, Dinkel H, Gibson TJ. (2012)

iELM--a web server to explore short linear motif-mediated interactions

Nucleic Acids Res. 40(Web Server issue):W364-9. doi:10.1093/nar/gks444
Europe PMC | doi

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ. (2012)

Attributes of short linear motifs

Mol Biosyst 8(1):268-281. doi:10.1039/c1mb05231d
Europe PMC | doi

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. (2012)

ELM--the database of eukaryotic linear motifs

Nucleic Acids Res. 40(Database issue):D242-51. doi:10.1093/nar/gkr1064
Europe PMC | doi


2011

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F. (2011)

Phospho.ELM: a database of phosphorylation sites--update 2011

Nucleic Acids Res. 39(Database issue):D261-7. doi:10.1093/nar/gkq1104
Europe PMC | doi


2008

Sander G, Konrad A, Thurau M, Wies E, Leubert R, Kremmer E, Dinkel H, Schulz T, Neipel F, Stürzl M. (2008)

Intracellular localization map of human herpesvirus 8 proteins

J. Virol. 82(4):1908-1922. doi:10.1128/jvi.01716-07
Europe PMC | doi


2007

Dinkel H, Sticht H. (2007)

A computational strategy for the prediction of functional linear peptide motifs in proteins

Bioinformatics 23(24):3297-3303. doi:10.1093/bioinformatics/btm524
Europe PMC | doi