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Staff at EMBL

Bora Uyar

Predoctoral Fellow
Gibson Team

EMBL Heidelberg, Meyerhofstra├če 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer? Uyar, B., Weatheritt, R.J., Dinkel, H., Davey, N.E. & Gibson, T.J. Mol Biosyst. 2014 Jul 24. Europe PMC

Short Linear Motifs: Ubiquitous and Functionally Diverse Protein Interaction Modules Directing Cell Regulation. Van Roey, K., Uyar, B., Weatheritt, R.J., Dinkel, H., Seiler, M., Budd, A., Gibson, T.J. & Davey, N.E. Chem Rev. 2014 Jun 13. Europe PMC

The eukaryotic linear motif resource ELM: 10 years and counting. Dinkel, H., Van Roey, K., Michael, S., Davey, N.E., Weatheritt, R.J., Born, D., Speck, T., Kruger, D., Grebnev, G., Kuban, M., Strumillo, M., Uyar, B., Budd, A., Altenberg, B., Seiler, M., Chemes, L.B., Glavina, J., Sanchez, I.E., Diella, F. & Gibson, T.J. Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047.Epub 2013 Nov 7. Europe PMC

RNA-seq analysis of the C. briggsae transcriptome. Uyar, B., Chu, J.S., Vergara, I.A., Chua, S.Y., Jones, M.R., Wong, T., Baillie, D.L. & Chen, N. Genome Res. 2012 Aug;22(8):1567-80. doi: 10.1101/gr.134601.111. Epub 2012 Jul 6. Europe PMC

Attributes of short linear motifs. Davey, N.E., Van Roey, K., Weatheritt, R.J., Toedt, G., Uyar, B., Altenberg, B., Budd, A., Diella, F., Dinkel, H. & Gibson, T.J. Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12. Europe PMC

Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans. Chu, J.S., Tarailo-Graovac, M., Zhang, D., Wang, J., Uyar, B., Tu, D., Trinh, J., Baillie, D.L. & Chen, N. Nucleic Acids Res. 2012 Jan;40(1):53-64. doi: 10.1093/nar/gkr690. Epub 2011 Sep8. Europe PMC

ELM--the database of eukaryotic linear motifs. Dinkel, H., Michael, S., Weatheritt, R.J., Davey, N.E., Van Roey, K., Altenberg, B., Toedt, G., Uyar, B., Seiler, M., Budd, A., Jodicke, L., Dammert, M.A., Schroeter, C., Hammer, M., Schmidt, T., Jehl, P., McGuigan, C., Dymecka, M., Chica, C., Luck, K., Via, A., Chatr-Aryamontri, A., Haslam, N., Grebnev, G., Edwards, R.J., Steinmetz, M.O., Meiselbach, H., Diella, F. & Gibson, T.J. Nucleic Acids Res. 2012 Jan 1;40(D1):D242-D251. Epub 2011 Nov 21. Europe PMC

genBlastG: using BLAST searches to build homologous gene models. She, R., Chu, J.S., Uyar, B., Wang, J., Wang, K. & Chen, N. Bioinformatics. 2011 Aug 1;27(15):2141-3. Epub 2011 Jun 8. Europe PMC