Staff at EMBL
Bora Uyar
Predoctoral Fellow
Gibson Team
EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany
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Publications
RNA-seq analysis of the C. briggsae transcriptome. Uyar, B., Chu, J.S., Vergara, I.A., Chua, S.Y., Jones, M.R., Wong, T., Baillie, D.L. & Chen, N. Genome Res. 2012 Jul 6. PubMed
Attributes of short linear motifs. Davey, N.E., Van Roey, K., Weatheritt, R.J., Toedt, G., Uyar, B., Altenberg, B., Budd, A., Diella, F., Dinkel, H. & Gibson, T.J. Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12. PubMed
ELM--the database of eukaryotic linear motifs. Dinkel, H., Michael, S., Weatheritt, R.J., Davey, N.E., Van Roey, K., Altenberg, B., Toedt, G., Uyar, B., Seiler, M., Budd, A., Jodicke, L., Dammert, M.A., Schroeter, C., Hammer, M., Schmidt, T., Jehl, P., McGuigan, C., Dymecka, M., Chica, C., Luck, K., Via, A., Chatr-Aryamontri, A., Haslam, N., Grebnev, G., Edwards, R.J., Steinmetz, M.O., Meiselbach, H., Diella, F. & Gibson, T.J. Nucleic Acids Res. 2012 Jan 1;40(D1):D242-D251. Epub 2011 Nov 21. PubMed
genBlastG: using BLAST searches to build homologous gene models. She, R., Chu, J.S., Uyar, B., Wang, J., Wang, K. & Chen, N. Bioinformatics. 2011 Aug 1;27(15):2141-3. Epub 2011 Jun 8. PubMed
Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans. Chu JSC, Tarailo-Graovac M, Zhang D, Wang J, Uyar B, Tu D, Trinh J, Baillie DL, and Chen N. Nucleic Acids Research, 2011. Link