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Staff at EMBL

CP-60012803

Bora Uyar

Predoctoral Fellow
Gibson Team

EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

E-mail: send a mail

Publications

Total: 8 publication(s)

2014

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ. (2014)
Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
Mol Biosyst doi:10.1039/C4MB00290C
Europe PMC | doi

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE. (2014)
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation
Chem. Rev. 114(13):6733-6778. doi:10.1021/cr400585q
Europe PMC | doi

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ. (2014)
The eukaryotic linear motif resource ELM: 10 years and counting
Nucleic Acids Res. 42(Database issue):D259-66. doi:10.1093/nar/gkt1047
Europe PMC | doi


2012

Uyar B, Chu JS, Vergara IA, Chua SY, Jones MR, Wong T, Baillie DL, Chen N. (2012)
RNA-seq analysis of the C. briggsae transcriptome
Genome Res. 22(8):1567-1580. doi:10.1101/gr.134601.111
Europe PMC | doi

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ. (2012)
Attributes of short linear motifs
Mol Biosyst 8(1):268-281. doi:10.1039/c1mb05231d
Europe PMC | doi

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. (2012)
ELM--the database of eukaryotic linear motifs
Nucleic Acids Res. 40(Database issue):D242-51. doi:10.1093/nar/gkr1064
Europe PMC | doi

Chu JS, Tarailo-Graovac M, Zhang D, Wang J, Uyar B, Tu D, Trinh J, Baillie DL, Chen N. (2012)
Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans
Nucleic Acids Res. 40(1):53-64. doi:10.1093/nar/gkr690
Europe PMC | doi


2011

She R, Chu JS, Uyar B, Wang J, Wang K, Chen N. (2011)
genBlastG: using BLAST searches to build homologous gene models
Bioinformatics 27(15):2141-2143. doi:10.1093/bioinformatics/btr342
Europe PMC | doi