EMBL Heidelberg, Meyerhofstraße 1, 69117 Heidelberg, Germany

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Publications

Total: 20 publication(s)

2015

Kosinski J, von Appen A, Ori A, Karius K, Müller CW, Beck M. (2015)

Xlink Analyzer: Software for analysis and visualization of cross-linking data in the context of three-dimensional structures.

J. Struct. Biol. 189(3):177-183. doi:10.1016/j.jsb.2015.01.014
Europe PMC | doi


2013

Milanowska K, Krwawicz J, Papaj G, Kosinski J, Poleszak K, Lesiak J, Osinska E, Rother K, Bujnicki JM. (2013)

REPAIRtoire - a database of DNA repair pathways

FEBS J 280:56.
Europe PMC

Kosinski J, Barbato A, Tramontano A. (2013)

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships

BIOINFORMATICS 29:953-954. doi:10.1093/bioinformatics/btt062
Europe PMC | doi


2012

Barbato A, Benkert P, Schwede T, Tramontano A, Kosinski J. (2012)

Improving your target-template alignment with MODalign

BIOINFORMATICS 28(7):1038-1039. doi:10.1093/bioinformatics/bts070
Europe PMC | doi


2011

Milanowska K, Krwawicz J, Papaj G, Kosinski J, Poleszak K, Lesiak J, Osinska E, Rother K, Bujnicki JM. (2011)

REPAIRtoire-a database of DNA repair pathways

NUCLEIC ACIDS RES 39:D788-D792. doi:10.1093/nar/gkq1087
Europe PMC | doi


2010

Kosinski J, Hinrichsen I, Bujnicki JM, Friedhoff P, Plotz G. (2010)

Identification of Lynch Syndrome Mutations in the MLH1-PMS2 Interface That Disturb Dimerization and Mismatch Repair

HUM MUTAT 31:975-982. doi:10.1002/humu.21301
Europe PMC | doi

Pukancsik M, Bekesi A, Klement E, Hunyadi-Gulyas E, Medzihradszky KF, Kosinski J, Bujnicki JM, Alfonso C, Rivas G, Vertessy BG. (2010)

Physiological truncation and domain organization of a novel uracil-DNA-degrading factor

FEBS J 277:1245-1259. doi:10.1111/j.1742-4658.2009.07556.x
Europe PMC | doi


2008

Kosinski J, Plotz G, Guarne A, Bujnicki JM, Friedhoff P. (2008)

The PMS2 subunit of human MutL alpha contains a metal ion binding domain of the iron-dependent repressor protein family

J MOL BIOL 382:610-627. doi:10.1016/j.jmb.2008.06.056
Europe PMC | doi


2007

Kosinski J, Kubareva E, Bujnicki JM. (2007)

A model of restriction endonuclease MvaI in complex with DNA: A template for interpretation of experimental data and a guide for specificity engineering

PROTEINS 68:324-336. doi:10.1002/prot.21460
Europe PMC | doi

Liu Y, Li ZJ, Lin QS, Kosinski J, Seetharaman J, Bujnicki JM, Sivaraman J, Hew CL. (2007)

Structure and Evolutionary Origin of Ca2+-Dependent Herring Type II Antifreeze Protein

PLOS ONE 2 doi:10.1371/journal.pone.0000548
Europe PMC | doi

Chovancova E, Kosinski J, Bujnicki JM, Damborsky J. (2007)

Phylogenetic analysis of haloalkane dehalogenases

PROTEINS 67:305-316. doi:10.1002/prot.21313
Europe PMC | doi

Miyazono K, Watanabe M, Kosinski J, Ishikawa K, Kamo M, Sawasaki T, Nagata K, Bujnicki JM, Endo Y, Tanokura M, Kobayashi I. (2007)

Novel protein fold discovered in the PabI family of restriction enzymes

NUCLEIC ACIDS RES 35:1908-1918. doi:10.1093/nar/gkm091
Europe PMC | doi


2006

Skowronek KJ, Kosinski J, Bujnicki JM. (2006)

Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis

PROTEINS 63:1059-1068. doi:10.1002/prot.20920
Europe PMC | doi

Ahrends R, Kosinski J, Kirsch D, Manelyte L, Giron-Monzon L, Hummerich L, Schulz O, Spengler B, Friedhoff P. (2006)

Identifying an interaction site between MutH and the C-terminal domain of MutL by crosslinking, affinity purification, chemical coding and mass spectrometry

NUCLEIC ACIDS RES 34:3169-3180. doi:10.1093/nar/gkl407
Europe PMC | doi

Zegers I, Gigot D, van Vliet F, Tricot C, Aymerich S, Bujnicki JM, Kosinski J, Droogmans L. (2006)

Crystal structure of Bacillus subtilis TrmB, the tRNA (m(7)G46) methyltransferase

NUCLEIC ACIDS RES 34:1925-1934. doi:10.1093/nar/gkl116
Europe PMC | doi


2005

Kosinski J, Steindorf I, Bujnicki JM, Giron-Monzon L, Friedhoff P. (2005)

Analysis of the quaternary structure of the MutL C-terminal domain

J MOL BIOL 351:895-909. doi:10.1016/j.jmb.2005.06.044
Europe PMC | doi

Kosinski J, Feder M, Bujnicki JM. (2005)

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function

BMC BIOINFORMATICS 6:172. doi:10.1186/1471-2105-6-172
Europe PMC | doi

Bujnicki JM, Feder M, Gajda MJ, Kosinski J, Gront D, Kolinski A. (2005)

Protein structure prediction by combination of fold-recognition with de novo folding

FEBS J 272:104.

Kosinski J, Gajda MJ, Cymerman IA, Kurowski MA, Pawlowski M, Boniecki M, Obarska A, Papaj G, Sroczynska-Obuchowicz P, Tkaczuk KL, Sniezynska P, Sasin JM, Augustyn A, Bujnicki JM, Feder M. (2005)

FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6

PROTEINS 61:106-113. doi:10.1002/prot.20726
Europe PMC | doi


2004

Ye XD, O'Neil PK, Foster AN, Gajda MJ, Kosinski J, Kurowski MA, Bujnicki JM, Friedman AM, Bailey-Kellogg C. (2004)

Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure

PROTEIN SCI 13:3298-3313. doi:10.1110/ps.04846604
Europe PMC | doi