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Next Generation Sequencing Data Analysis

EMBL Heidelberg, Germany Monday 3 May - Tuesday 4 May 2010
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Programme

Preliminary Programme

Monday, 3 May 2010  09:30 am - 5:00 pm
Introduction to the Genomatix NGS analysis pipeline - methodological background Demo and hands-on analysis examples for ChIP-Seq and RNA-Seq:

- mapping
- SNP detection
- splice junction detection
- clustering (peak detection)
- expression analysis
- read and cluster classification
- analysis of overrepresented TF binding sites and modules
- definition of new common sequence motifs in ChIP regions
- next-neighbor analysis of ChIP regions
- TFBS framework analysis of ChIP regions
- meta analysis: positional correlation of different data sets and genomic annotation
- visualization in genome browser
Tuesday, 4 May 2010  09:00 am - 5:00 pm (open ended for return trip)
On the second day participants are encouraged to bring their own data. Please make sure that the format of your data accords with the specifications outlined here.