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9:30 - 12:00
Talk: Vladimir Benes, GeneCore at EMBL Heidelberg, on NGS library preparation
Introduction to Genomatix Mining Station (GMS) - methodological background
GMS demonstration: mapping, SNP detection, read classification
13:00 - 17:00
Introduction to Genomatix Genome Analyzer (GGA) - methodological background
Hands-on examples using the GGA:
- Expression analysis
- Data visualization
- Peak detection and classification
- TF binding site analysis in ChIP peaks
- De novo definition of common sequence motifs from ChIP data
- Next-neighbor analysis and regulatory target prediction for ChIP regions
- Meta analysis of different data sets
- SNP analysis
- Assessment of related biology
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9:00 - 17:00
The second day is reserved for the analysis of your own data.
In order for you to be able to use your data in the course, please make sure of the following:
Firstly, that the format and content of your data is supported by the Genomatix system. Please consult the link for supported data formats and source organisms.
Secondly, if you have sequence data that needs to be mapped it must reach us one week before the course at the latest - please find a detailed description how to upload your data in your course confirmation email.
Talks on Wednesday:
09:00 George Reid, DKFZ Heidelberg, on Methylation studies
13:00 Jonathon Blake, GeneCore at EMBL Heidelberg, on RNA sequencing
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