EMBO Conference Series
From Functional Genomics to Systems Biology
EMBL Heidelberg, Germany Saturday 13 November - Tuesday 16 November 2010
Programme
|
Day One: Saturday 13 November 2010 |
|
|---|---|
| 13:00 - 15:00 | Registration (EMBL Advanced Training Centre) |
| 15:00 - 15:05 | Welcome address |
| 15:05 - 16:50 | Session I - Chair: Rick Young, Whitehead Institute, USA ( Klaus Tschira Auditorium) |
| 15:05 - 15:35 | Jonathan Weissman, University of California San Francisco, USA - Nascent transcript sequencing visualizes transcription at nucleotide resolution |
| 15:35 - 16:05 | Susan Mango, University of Utah, USA - How do embryos form complex organs such as liver or eyes? |
| 16:05 - 16:20 | Mattias Alenius, Linkoping University, Sweden - A regulatory matrix controlling selective odorant receptor expression in drosophila |
| 16:20 - 16:50 | Lucas Pelkmans, ETH Zurich, Switzerland - Cell-to-cell variability modelling reveals complex RNAi phenotypes in virus infection |
| 16:50 - 17:20 | Coffee Break (ATC Foyer) |
| 17:20 - 17:50 | Jason Lieb, The University of North Carolina at Chapel Hill, USA - Transcription factor binding dynamics and chromatin-membrane interactions |
| 17:50 - 18:05 | JeanChristophe Andrau, CNRS, France - Tips: Novel features of the genomic landscape |
| 18:05 - 18:35 | Luis Serrano, Center for Genomic Regulation, Spain - Genome-wide quantification of mRNA, protein levels and turnover in a bacterium |
| 18:45 - 21:00 | Dinner (Canteen) |
| 20:00 - 22:30 | After dinner drinks & socializing in the Rooftop Lounge |
|
Day Two: Sunday 14 November 2010 |
|
| 09:00 - 12:30 | Session II - Chair: Susan Mango, University of Utah, USA (Klaus Tschira Auditorium) |
| 09:00 - 09:30 | Michael Snyder, Stanford University, USA - Extensive “in vivo” metabolite-protein interactions revealed by large-scale systematic analyses |
| 09:30 - 10:00 | Marian Walhout, UMASS Medical School, USA - Gene-centered regulatory networks |
| 10:00 - 10:15 | Bart Deplancke, EPFL, Switzerland - Structural variant-mediated, fine-grained partitioning of the Drosophila genome into regions of regulatory activity |
| 10:15 - 10:45 | Bing Ren, University of California San Diego, USA - Comprehensive analysis of cis-regulatory elements in the mouse genome |
| 10:45 - 11:15 | Coffee Break (ATC Foyer) |
| 11:15 - 11:45 | Mike Tyers, University of Edinburgh, UK - Deconstruction and modulation of cellular networks |
| 11:45 - 12:00 | Guillaume Filion, The Netherlands Cancer Institute, Netherlands - Systematic protein-genome interaction maps reveal 5 chromatin types in Drosophila |
| 12:00 - 12:30 | Eileen Furlong, EMBL Heidelberg, Germany - Linking transcription factor occupancy and chromatin state to regulatory activity in both space and time |
| 12:30 - 14:00 | Lunch (Canteeen) |
| 14:00 - 15:30 | Poster Session I: A - M |
| 15:30 - 19:00 | Session III - Chair: Stuart Kim, Stanford University, USA (Klaus Tschira Auditorium) |
| 15:30 - 16:00 | Erin O’Shea, Harvard University, USA - Multi-signal encoding by modulation of transcription factor translocation dynamics |
| 16:00 - 16:30 | Job Dekker, UMASS Medical School, USA - Long-range gene regulatory architecture of the human genome |
| 16:30 - 16:45 | Johannes Jaeger, Center for Genomic Regulation, Spain - Shift happens: The developmental and evolutionary dynamics of the gap gene network |
| 16:45 - 17:15 | Frank Holstege, University Medical Center Utrecht, Netherlands - Understanding regulatory circuitry |
| 17:15- 17:45 | Coffee Break (ATC Foyer) |
| 17:45 - 18:15 | Jan Korbel, EMBL Heidelberg, Germany - Structural variation in the genome: extent, origin, and functional impact |
| 18:15 - 18:30 | Polly Fordyce, University of California San Francisco, USA - De novo identification and biophysical characterization of transcription factor binding sites with microfluidic affinity analysis |
| 18:30 - 19:00 | Trey Ideker, University of California San Diego, USA - Biomarkers as networks, not individual loci |
| 19:00 - 20:30 | Dinner (Canteen) |
| 20:00 - 22:00 | After dinner drinks & socializing in the Rooftop Lounge |
|
Day Three: Monday 15 November 2010 |
|
| 09.00 - 12:30 | Session IV - Chair: Eileen Furlong, EMBL Heidelberg, UK (Klaus Tschira Auditorium) |
| 09:00 - 09:30 | Richard Young, Whitehead institute, USA - Gene control, chromosome structure and human disease |
| 09:30 - 10:00 | Alex Stark, IMP Vienna,. Austria - High conservation of transcription factor binding across six Drosophila species |
| 10:00 - 10:15 | Georgy Koentges, University of Warwick, UK - Single cell systems analysis of vertebrate cis-regulatory module function and promoter communication |
| 10:15 - 10:45 | Sandra Schmid, The Scripps Research institute, USA - Comprehensive and unbiased analysis of dynamic behavior or clathrin coated pits in vivo |
| 10:45 - 11:15 | Coffee Break (ATC Foyer) |
| 11:15 - 11:45 | John Hogenesch, University of Pennsylvannia, USA - Systematic and systems approaches to understanding the mammalian clock |
| 11:45 - 12:00 | Julien Mozziconacci, UPMC, France - Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide |
| 12:00 - 12:30 |
Ben Scheres, Utrecht University, Netherlands - Gene networks for plant stem cell specification |
| 12:30 - 14:00 | Lunch (ATC Foyer) |
| 14:00 - 15:30 | Poster Session II: M - Z |
| 15:30 - 19:00 | Session V: Chair - Job Dekker, UMASS Medical School, USA (Klaus Tschira Auditorium) |
| 15:30 - 16:00 | Patrick Cramer, University of Munich, Germany - Nascent transcriptome analysis reveals dynamics of mRNA synthesis and decay in yeast |
| 16:00 - 16:30 | Uwe Sauer, ETH Zurich, Switzerland - Transcriptional control of metabolic function and the governing principles behind it |
| 16:30 - 16:45 | Brian Oliver, NIH, USA - Primary and secondary transcriptional response to altered gene dose |
| 16:45 - 17:15 | Daphne Koller, Stanford University, USA - Understanding Gene Regulation: Networks and Perturbations |
| 17:15 - 17:45 | Coffee Break (ATC Foyer) |
| 17:45 - 18:15 | Howard Chang, Stanford University, USA - Genome-wide views of RNA structural dynamics |
| 18:15 - 18:30 | Tali Raveh Sadka, Weizmann Institute of Science, Israel - Transcriptional Lego? Tuning expression levels in a predictable manner by manipulating promoter building blocks |
| 18:30 - 19:00 | Philippe Bastiaens, MPI Dortmund, Germany - Spatial cycles in intracellular growth factor signaling |
| 19:00 - 24:00 | Gala Dinner & Party |
|
Day Four: Tuesday 16 November 2010 |
|
| 09:00 - 12:30 | Session VI: Chair - Frank Holstege, University Medical Center Utrecht, Netherlands (Klaus Tschira Auditorium) |
| 09:00 - 09:30 | Matthias Mann, MPI Martinsried, Germanuy - Making precision proteomics’ a reality |
| 09:30 - 10:00 | Aviv Regev, Broad Institute, USA - Unbiased reconstruction of mammalian regulatory networks: lessons from the immune system |
| 10:00 - 10:15 | Thomas Sandmann, German Cancer Research Center, Germany - Mapping of signaling networks through synthetic genetic interaction analysis by RNAi |
| 10:15 - 10:45 | Paul Flicek, EMBL-EBI Hinxton, UK - Evolutionary dynamics of sequence-specific DNA binding protein interactions |
| 10:45 - 11:15 | Coffee Break (ATC Foyer) |
| 11:15 - 11:45 | Stuart Kim, Stanford University, USA - Developmental drift and aging stochasticity in C. elegans |
| 11:45 - 12:00 | Julia Schulze, University of Vancouver, Canada - Genome-wide analysis of H2B ubiquitination and deubiquitination in the context of histone H3 methylation |
| 12:00 - 12:30 | Lars Steinmetz, EMBL Heidelberg, Germany - Genome-wide implications of antisense non-coding transcription |
| 12:30 - 12:35 | Closing remarks |
| 13:00 | Bus shuttle to Frankfurt Airport |