EMBL Advanced Course
Whole Transcriptome Data Analysis
EMBL Heidelberg, Germany Tuesday 25 June - Thursday 27 June 2013 Application closed
Programme
| Time | Topic |
|---|---|
| 09:00 - 09:15 | Course Introduction (Benes) |
| 09:15 - 11:15 | OneChannelGUI introduction, data loading, normalization, QC and data filtering at gene-level for Affymetrix, Illumina gene expression arrays and GEO datasets (Calogero) |
| 11:15 - 11:35 | Coffee break |
| 11:35 - 13:00 | Gene-level differential expression analysis (Calogero) |
| 13:00 - 14:00 | Lunch |
| 14:00 - 17:00 | Gene-level exercise session |
| Evening Dinner downtown Heidelberg |
| Time | Topic |
|---|---|
| 09:00 - 10:00 | About NGS sequencing technologies (Benes) |
| 10:00 - 11:00 | NGS primary mapping tools (Cordero) |
| 11:00 - 11:30 | Coffee Break |
| 11:30 - 12:00 | About alternative splicing analysis with RNA-seq (Cordero) |
| 12:00 - 12:30 | mRNA-seq Fusion-detection approaches (Calogero) |
| 12:30 - 13:00 | miRNA-seq data analysis pipe-line (Calogero) |
| 13:00 - 14:00 | Lunch |
| 14:00 - 14:30 | miRNA-seq: microRNA data analysis on oneChannelGUI, (Calogero) |
| 14:30 - 15:30 | microRNA exercise session |
| 15:30 - 16:00 | Coffee Break |
| 16:00 - 17:00 | microRNA gene target detection (Calogero) |
| Time | Topic |
|---|---|
| 10:00 - 10:45 | RNA-seq with oneChannelGUI (Calogero) |
| 10:45 - 11:15 | Coffee Break |
| 11:15 -13:00 | RNA-seq exercise |
| 13:00 - 14:00 | Lunch |
| 14:00 - 16:00 | RNA-seq exercise |
| 16:00 onwards | Departure |
