Top image

EMBL Advanced Course

Whole Transcriptome Data Analysis

EMBL Heidelberg, Germany Tuesday 25 June - Thursday 27 June 2013 Application closed
context.title

Programme

2013 Programme

Day 1 - Tuesday, 25 June 2013
TimeTopic
09:00 - 09:15 Course Introduction (Benes)
09:15 - 11:15 OneChannelGUI introduction, data loading, normalization, QC and data filtering at gene-level for Affymetrix, Illumina gene expression arrays and GEO datasets (Calogero)
11:15 - 11:35 Coffee break
11:35 - 13:00 Gene-level differential expression analysis (Calogero)
13:00 - 14:00 Lunch
14:00 - 17:00 Gene-level exercise session
  Evening Dinner downtown Heidelberg
 
 
Day 2 - Wednesday, 26 June 2013
TimeTopic
09:00 - 10:00 About NGS sequencing technologies (Benes)
10:00 - 11:00 NGS primary mapping tools (Cordero)
11:00 - 11:30 Coffee Break
11:30 - 12:00 About alternative splicing analysis with RNA-seq (Cordero)
12:00 - 12:30 mRNA-seq Fusion-detection approaches (Calogero)
12:30 - 13:00 miRNA-seq data analysis pipe-line (Calogero)
13:00 - 14:00 Lunch
14:00 - 14:30 miRNA-seq: microRNA data analysis on oneChannelGUI, (Calogero)
14:30 - 15:30 microRNA exercise session
15:30 - 16:00 Coffee Break
16:00 - 17:00 microRNA gene target detection (Calogero)
 
 
Day 3 - Thursday, 27 June 2013
TimeTopic
10:00 - 10:45 RNA-seq with oneChannelGUI (Calogero)
10:45 - 11:15 Coffee Break
11:15 -13:00 RNA-seq exercise
13:00 - 14:00 Lunch
14:00 - 16:00 RNA-seq exercise
16:00 onwards Departure