Identification of protein repeats and statistical significance of sequence comparisons

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Identification of protein repeats and statistical significance of sequence comparisons

M.A. Andrade(1,2), C. Ponting(3), T. Gibson(1) and P. Bork(1,2)

J. Mol. Biol. (2000) 298, 521-537.

(1) European Molecular Biology Laboratory,
D-69012 Heidelberg, Germany

(2) Max Delbrück Center for Molecular Medicine
Department of Bioinformatics
PO Box 740238
D-13092 Berlin-Buch, Germany

(3) MRC Functional Genetics Unit
University of Oxford
Department of Human Anatomy and Genetics
South Parks Road, Oxford, OX1 3QX, UK

Web appendix

Search your protein for repeats using REP

Results of repeat detection in SwissProt.
(Appendix to Table II)

Results of repeat detection in three model organisms.
(Appendix to Table III)

See the alignments used for the analysis:
Ankyrin, Armadillo, HAT, HEAT, Kelch, Leucin Rich Repeats, PFTA, PFTB, RCC1, TPR, WD40

[Andrade Home] [Bork Group]