About me   Publications   Research   Events   Links   Courses  
I am working as a postdoctoral research fellow in the Cell Biology and Biophysics Division, EMBL Heidelberg under Eric Karsenti, and am funded by BioMS (bio modeling and simulations www.bioms.de) for a 3-year period.  My primary interest is working at the interface of experiment and theory on spatial pattern formation in cells that occurs by self-organization in bioysystems, in contrast to the genetic or pre-programmed patterns, where specific rules exist for each part of the pattern. I primarily study use models of reaction diffusion (RD) and cytoskeletal dynamics at a very coarse-grained level using cytosim. I work with and extend the code for my own simulations.

I am applying these principles to spindle assembly, as well as learning more about the mechanical motor-cytoskeleton interactions.

Currently some interactions have revived my interest in using ActionScript and FLASH to visualize models and simulations. Some recent examples can be seen here .
In the past I had used autonomous agentsto simulate the avascular growth of glioblastomas in a multi-scale system. tumor spread in simulation

Experimental testing of models is a strong motivation for me. I perform microscopy experiments and image analysis on data (provided by collaborators or my own), to extract quantitative measures of the process- in this case spindle assembly.

 

 

 

Research Experience

  • BioMS Postdoctoral research fellow, EMBL Heidelberg, Karsenti Lab, Cell-biology and biophysics Div. 2005-now
  • Postdoctoral research fellow, HST (Harvard-MIT Health Sciences and Technology), Complex Biosystems Modeling Lab, Thomas Deisboeck, Boston, USA 2003-5
  • Teaching assistant, Lab Erni, Dept. of Chemistry and Biochemistry, University of Berne, Switzerland 1998-2000

Education

Other

  • Kleines Deutches Sprachdiplom (KDS), Goethe Institut (Max Mueller Bhavan) Pune/LMU Munich, 1996 (Note I)
  • MIT
OpenCourseWare: I'm invested

    Author: Chaitanya Athale, EMBL Heidelberg
    Date: 18-May-2009
    Next update: -
    [Main Page] [EMBL]