WWW hotlist (Peer Bork )

Biology

group pages

  • group blast booby blast2 , blast_adm
  • Statistics
  • string
  • module pages,
  • SMART input , SMART viewer , SMART yeast , Extracellular modules, 3D
  • Alerting systems: sequence alert , alert for extracellular modules

    • EMBL local

  • SRS: SRS5 home, SRS5 start,
  • EMBL: home Page , phonebook
  • motifs/patterns/profiles
  • Bork group hotlist , Sander group hotlist, Wade group hotlist
  • MDC

    • Sequences/Structures/Medline

  • Entrez genomes, general browser
  • PubMed PubMed
  • Bioinf literature UCSD site
  • PsiBlast: NCBI Blast2: ncbi
  • beauty
  • Geneva's Expasy
  • PhD server at Columbia
  • GeneQuiz EBI
  • PDB: Protein databank (Brookhaven WWW server)
  • SCOP classification of structures
  • Search enzyme DB
  • DBGET database link diagram
  • boxshade in ISREC
  • intrinsic features
  • coils interface at ISREC
  • tmap at EMBL, Tpred at ISREC, Nakai's PSORT (localization)
  • ribosomal trees

    • Genomes, organism-specific DBs

  • TIGR's list of completed microbial genomes , Terry's list of genomes
  • TIGR,
  • Genome projects
  • Genome databases
  • B.subtilis database
  • M. pneumoniae
  • Sulfolobus solfataricus - Halifax
  • Genome Data Base - Home Page
  • MycDB: sweden , su
  • QUEST Protein Database Center
  • Yeast:Amos' yeast summary YPD server
  • Flybase UK

    • Domain tools

  • Pfam: Sanger , WU
  • PROSITE profiles , PROSITE pattern
  • Associative DB
  • blocks
  • Proclass

    • Pathways

  • MAGPIE
  • PUMA: Argonne nets
  • EcoCyc: E. coli Genes and Metabolism
  • Kanehisas KEGG
  • WIT

    • Disease

  • Search OMIM
  • Locus-sepcific mutation DB
  • Boguski crossref human genes
  • positionally cloned disease genes
  • Protein disease database

    • Bioinfo/Bio-starting points

  • Pedro's list of servers/databases , mirror Duesseldorf
  • EBI's biosearching
  • Harvard: The World-Wide Web Virtual Library: Biosciences

    • Literature

  • nature
  • Nature Genet
  • science
  • elsevier home page , Gene-Combis
  • Prot.Sci. home page
  • Cell press
  • JMB
  • JBC
  • PNAS
  • BioMedNet:Structure, Curr.Opinions, Macromo.Str.
  • various others..."

    • others

  • WebCrawler - keyword searching , Lycos , Yahoo ,
  • Search engine catalogues: US, CA, ?
  • WWW Subject Catalogue
  • Eng-Deu dictionary , list of English-... Dictionaries
  • GAMS : Problem Taxonomy