Publications

 

1.     Haudry Y, Ong CK, Ettwiller L, Berube H, Letunic I, Weeber PD, Wang X, Gaugneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong E, Wittbrodt J, Henrich, T.1
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress
(in press, Advances in Bioinformatics & Computational Biology  2008)

2.     Haudry Y, Berube H, Letunic I, Weeber PD, Gaugneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong E, Wittbrodt J, Henrich, T.1
4DXpress: A database for cross species expression pattern comparisons
(in press NAR database issue 2008)

3.     Martinez-Morales, J.R. 2, Henrich, T. 2, Ramialison, M.2, and M., Wittbrodt,.
New genes in the evolution of the neural crest differentiation program.
Genome Biol 2007; 8, R36

4.     Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, Mills JC, Oudes A, Parkinson HE, Pascal LE, Quackenbush J, Ramialison M, Ringwald M, Sansone SA, Sherlock G, Stoeckert CJ, Swedlow J, Taylor RC, Walashek L, Zhou Y, Liu AY, True LD.
Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).
OMICS. 2006 Summer;10(2):205-8.

5.     Henrich T1,2, Ramialison M2, Wittbrodt B, Assouline B, Bourrat F, Berger A, Himmelbauer H, Sasaki T, Shimizu N, Westerfield M, Kondoh H and Wittbrodt J
MEPD: A resource for medaka gene expression patterns
Bioinformatics 2005; 21, 3195-3197

6.     Schartl M, Nanda I, Kondo M, Schmid M, Asakawa S, Sasaki T, Shimizu N, Henrich T, Wittbrodt J, Furutani-Seiki M, Kondoh H, Himmelbauer H, Hong Y, Koga A, Nonaka M, Mitani H, Shima A.
Current status of medaka genetics and genomics. The Medaka Genome Initiative (MGI).
Methods Cell Biol. 2004; 77:173-99.
PMID: 15602912

7.     Quiring R, Wittbrodt B, Henrich T, Ramialison M, Burgtorf C, Lehrach H, Wittbrodt J.
Large-scale expression screening by automated whole-mount in situ hybridization.
Mech Dev. 2004 Jul;121(7-8):971-6.
PMID: 15210201

8.     Henrich T1, Ramialison M, Segerdell E, Westerfield M, Furutani-Seiki M, Wittbrodt J, Kondoh H.
GSD: a genetic screen database.
Mech Dev. 2004 Jul;121(7-8):959-63.
PMID: 15210199

9.     Aizawa K, Mitani H, Kogure N, Shimada A, Hirose Y, Sasado T, Morinaga C, Yasuoka A, Yoda H, Watanabe T, Iwanami N, Kunimatsu S, Osakada M, Suwa H, Niwa K, Deguchi T, Hennrich T, Todo T, Shima A, Kondoh H, Furutani-Seiki M.
Identification of radiation-sensitive mutants in the Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):895-902.
PMID: 15210194

10.  Morinaga C, Tomonaga T, Sasado T, Suwa H, Niwa K, Yasuoka A, Henrich T, Watanabe T, Deguchi T, Yoda H, Hirose Y, Iwanami N, Kunimatsu S, Okamoto Y, Yamanaka T, Shinomiya A, Tanaka M, Kondoh H, Furutani-Seiki M.
Mutations affecting gonadal development in Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):829-39.
PMID: 15210189

11.  Sasado T, Morinaga C, Niwa K, Shinomiya A, Yasuoka A, Suwa H, Hirose Y, Yoda H, Henrich T, Deguchi T, Iwanami N, Watanabe T, Kunimatsu S, Osakada M, Okamoto Y, Kota Y, Yamanaka T, Tanaka M, Kondoh H, Furutani-Seiki M.
Mutations affecting early distribution of primordial germ cells in Medaka (Oryzias latipes) embryo.
Mech Dev. 2004 Jul;121(7-8):817-28.
PMID: 15210188

12.  Watanabe T, Asaka S, Kitagawa D, Saito K, Kurashige R, Sasado T, Morinaga C, Suwa H, Niwa K, Henrich T, Hirose Y, Yasuoka A, Yoda H, Deguchi T, Iwanami N, Kunimatsu S, Osakada M, Loosli F, Quiring R, Carl M, Grabher C, Winkler S, Del Bene F, Wittbrodt J, Abe K, Takahama Y, Takahashi K, Katada T, Nishina H, Kondoh H, Furutani-Seiki M.
Mutations affecting liver development and function in Medaka, Oryzias latipes, screened by multiple criteria.
Mech Dev. 2004 Jul;121(7-8):791-802.
PMID: 15210186

13.  Iwanami N, Takahama Y, Kunimatsu S, Li J, Takei R, Ishikura Y, Suwa H, Niwa K, Sasado T, Morinaga C, Yasuoka A, Deguchi T, Hirose Y, Yoda H, Henrich T, Ohara O, Kondoh H, Furutani-Seiki M.
Mutations affecting thymus organogenesis in Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):779-89.
PMID: 15210185

14.  Yasuoka A, Hirose Y, Yoda H, Aihara Y, Suwa H, Niwa K, Sasado T, Morinaga C, Deguchi T, Henrich T, Iwanami N, Kunimatsu S, Abe K, Kondoh H, Furutani-Seiki M.
Mutations affecting the formation of posterior lateral line system in Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):729-38.
PMID: 15210180

15.  Yoda H, Hirose Y, Yasuoka A, Sasado T, Morinaga C, Deguchi T, Henrich T, Iwanami N, Watanabe T, Osakada M, Kunimatsu S, Wittbrodt J, Suwa H, Niwa K, Okamoto Y, Yamanaka T, Kondoh H, Furutani-Seiki M.
Mutations affecting retinotectal axonal pathfinding in Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):715-28.
PMID: 15210179

16.  Loosli F, Bene FD, Quiring R, Rembold M, Martinez-Morales JR, Carl M, Grabher C, Iquel C, Krone A, Wittbrodt B, Winkler S, Sasado T, Morinaga C, Suwa H, Niwa K, Henrich T, Deguchi T, Hirose Y, Iwanami N, Kunimatsu S, Osakada M, Watanabe T, Yasuoka A, Yoda H, Winkler C, Elmasri H, Kondoh H, Furutani-Seiki M, Wittbrodt J.
Mutations affecting retina development in Medaka.
Mech Dev. 2004 Jul;121(7-8):703-14.
PMID: 15210178

17.  Kitagawa D, Watanabe T, Saito K, Asaka S, Sasado T, Morinaga C, Suwa H, Niwa K, Yasuoka A, Deguchi T, Yoda H, Hirose Y, Henrich T, Iwanami N, Kunimatsu S, Osakada M, Winkler C, Elmasri H, Wittbrodt J, Loosli F, Quiring R, Carl M, Grabher C, Winkler S, Del Bene F, Momoi A, Katada T, Nishina H, Kondoh H, Furutani-Seiki M.
Genetic dissection of the formation of the forebrain in Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):673-85.
PMID: 15210176

18.  Elmasri H, Winkler C, Liedtke D, Sasado T, Morinaga C, Suwa H, Niwa K, Henrich T, Hirose Y, Yasuoka A, Yoda H, Watanabe T, Deguchi T, Iwanami N, Kunimatsu S, Osakada M, Loosli F, Quiring R, Carl M, Grabher C, Winkler S, Del Bene F, Wittbrodt J, Abe K, Takahama Y, Takahashi K, Katada T, Nishina H, Kondoh H, Furutani-Seiki M.
Mutations affecting somite formation in the Medaka (Oryzias latipes).
Mech Dev. 2004 Jul;121(7-8):659-71.
PMID: 15210175

19.  Furutani-Seiki M, Sasado T, Morinaga C, Suwa H, Niwa K, Yoda H, Deguchi T, Hirose Y, Yasuoka A, Henrich T, Watanabe T, Iwanami N, Kitagawa D, Saito K, Asaka S, Osakada M, Kunimatsu S, Momoi A, Elmasri H, Winkler C, Ramialison M, Loosli F, Quiring R, Carl M, Grabher C, Winkler S, Del Bene F, Shinomiya A, Kota Y, Yamanaka T, Okamoto Y, Takahashi K, Todo T, Abe K, Takahama Y, Tanaka M, Mitani H, Katada T, Nishina H, Nakajima N, Wittbrodt J, Kondoh H.
A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes.
Mech Dev. 2004 Jul;121(7-8):647-58.
PMID: 15210174

20.  Grabher C, Henrich T2, Sasado T2, Arenz A, Wittbrodt J, Furutani-Seiki M.
Transposon-mediated enhancer trapping in medaka.
Gene. 2003 Dec 11;322:57-66. Erratum in: Gene. 2004 Mar 3;327(2):239.
PMID: 14644497

21.  Henrich T1, Ramialison M, Quiring R, Wittbrodt B, Furutani-Seiki M, Wittbrodt J, Kondoh H;
Medaka Expression Pattern Database.   MEPD: a Medaka gene expression pattern database.
Nucleic Acids Res. 2003 Jan 1;31(1):72-4.
PMID: 12519950

22.  Loosli F, Winkler S, Burgtorf C, Wurmbach E, Ansorge W, Henrich T, Grabher C, Arendt D, Carl M, Krone A, Grzebisz E, Wittbrodt J.
Medaka eyeless is the key factor linking retinal determination and eye growth.
Development. 2001 Oct;128(20):4035-44.
PMID: 11641226

23.  Loosli F, Koster RW, Carl M, Kuhnlein R, Henrich T, Mucke M, Krone A, Wittbrodt J.
A genetic screen for mutations affecting embryonic development in medaka fish (Oryzias latipes).
Mech Dev. 2000 Oct;97(1-2):133-9.
PMID: 11025214

24.  Winkler S, Loosli F, Henrich T, Wakamatsu Y, Wittbrodt J.
The conditional medaka mutation eyeless uncouples patterning and morphogenesis of the eye.
Development. 2000 May;127(9):1911-9.
PMID: 10751179

25.  Henrich T, Wittbrodt J.
An in situ hybridization screen for the rapid isolation of differentially expressed genes.
Dev Genes Evol. 2000 Jan;210(1):28-33.
PMID: 10603084

26.  Nguyen V, Deschet K, Henrich T, Godet E, Joly JS, Wittbrodt J, Chourrout D, Bourrat F.
Morphogenesis of the optic tectum in the medaka (Oryzias latipes): a morphological and molecular study, with special emphasis on cell proliferation.
J Comp Neurol. 1999 Oct 25;413(3):385-404.
PMID: 10502247

 

1) corresponding author      2) equal contribution