DELLY: Structural variant discovery by integrated paired-end and split-read analysis

DELLY is an integrated structural variant prediction method that can detect deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome. The algorithm is described in:

DELLY: structural variant discovery by integrated paired-end and split-read analysis
Tobias Rausch; Thomas Zichner; Andreas Schlattl; Adrian M. Stütz; Vladimir Benes; Jan O. Korbel
Bioinformatics 2012 28: i333-i339

The latest multi-sample DELLY version is available on github. The old single sample DELLY package is still available here.

If you have any questions, comments, bug reports or suggestions feel free to email me or subscribe to delly-users.

- Tobias Rausch

Tobias Rausch Email