| Available | Title | Quote | Available |
| Secondary structure | |||
| - | A modified definition of SOV, a segment-based measure for protein secondary structure prediction assessment | A Zemla, C Venclovas, K Fidelis and B Rost (1999) Proteins, 34, 220-223 | - |
| www-abstr | Better 1D predictions by experts with machines | B Rost (1997) Proteins, Suppl. 1, 192-197 | www-abstr |
| www-abstr | PHD: predicting one-dimensional protein structure by profile based neural networks | B Rost (1996) Methods in Enzymology, 266, 525-539 | www-abstr |
| abstr | Topology prediction for helical transmembrane proteins at 86% accuracy | B Rost, R Casadio and P Fariselli (1996) Protein Science, 5, 1704-1718 | abstr |
| abstr | Progress of 1D protein structure prediction at last | B Rost and C Sander (1995) Proteins, 23, 295-300 | abstr |
| abstr | PHD - an automatic server for protein secondary structure prediction | B Rost, C Sander and R Schneider (1994) CABIOS, 10, 53-60 | abstr |
| abstr | Redefining the goals of protein secondary structure prediction | B Rost, C Sander and R Schneider (1994) Journal of Molecular Biology, 235, 13-26 | abstr |
| - | Evolution and neural networks - protein secondary structure prediction above 71% accuracy | B Rost, C Sander and R Schneider (1994) 27th Hawaii International Conference on System Sciences, 5, 385-394 | - |
| abstr | 1D secondary structure prediction through evolutionary profiles | B Rost and C Sander (1994) in: 'Protein Structure by Distance Analysis' (eds. H Bohr and S Brunak), 257-276 | abstr |
| abstr | Combining evolutionary information and neural networks to predict protein secondary structure | B Rost and C Sander (1994) Proteins, 19, 55-72 | abstr |
| abstr | Improved prediction of protein secondary structure by use of sequence profiles and neural networks | B Rost and C Sander (1993) Proceedings of the National Academy of Sciences, 90, 7558-7562 | abstr |
| abstr | Prediction of protein secondary structure at better than 70% accuracy | B Rost and C Sander (1993) Journal of Molecular Biology, 232, 584-599 | abstr |
| abstr | Secondary structure prediction of all-helical proteins in two states | B Rost and C Sander (1993) Protein Engineering, 6, 831-836 | abstr |
| - | Jury returns on structure prediction | B Rost and C Sander (1992) Nature, 360, 540 | - |
| abstr | Exercising multi-layered networks on protein secondary structure | B Rost and C Sander (1992) Neural Networks: From Biology to High Energy Physics, 3, 209-220 | abstr |
| Solvent accessibility | |||
| www-abstr | Adaptation of protein surfaces to subcellular location | MA Andrade, SI O'Donoghue and B Rost (1998) Journal of Molecular Biology, 276, 517-525 | www-abstr |
| www-abstr | Better 1D predictions by experts with machines | B Rost (1997) Proteins, Suppl. 1, 192-197 | www-abstr |
| www-abstr | PHD: predicting one-dimensional protein structure by profile based neural networks | B Rost (1996) Methods in Enzymology, 266, 525-539 | www-abstr |
| abstr | Progress of 1D protein structure prediction at last | B Rost and C Sander (1995) Proteins, 23, 295-300 | abstr |
| abstr | Conservation and prediction of solvent accessibility in protein families | B Rost and C Sander (1994) Proteins, 20, 216-226 | abstr |
| Transmembrane segments | |||
| - | The role of transmembrane domains in the functions of B- and T-cell receptors | R Zidovetzki, B Rost and I Pecht (1998) Immunology Letters, 64, 97-107 | - |
| www-abstr | PHD: predicting one-dimensional protein structure by profile based neural networks | B Rost (1996) Methods in Enzymology, 266, 525-539 | www-abstr |
| abstr | Refining neural network predictions for helical transmembrane proteins by dynamic programming | B Rost, R Casadio and P Fariselli (1996) Fourth International Conference on Intelligent Systems for Molecular Biology, 192-200 | abstr |
| abstr | Topology prediction for helical transmembrane proteins at 86% accuracy | B Rost, R Casadio and P Fariselli (1996) Protein Science, 5, 1704-1718 | abstr |
| abstr | Prediction of helical transmembrane segments at 95% accuracy | B Rost, R Casadio, P Fariselli and C Sander (1995) Protein Science, 4, 521-533 | abstr |
| Threading (remote homology) | |||
| - | A platform for integrating threading results with other information | F Pazos, B Rost and A Valencia (1999) Bioinformatics, in press | - |
| - | Effective use of sequence correlation and conservation in fold recognition | O Olmea, B Rost and A Valencia (1999) Journal of Molecular Biology, in press | - |
| www-abstr | Protein fold recognition by prediction-based threading | B Rost, R Schneider and C Sander (1997) Journal of Molecular Biology, 270, 471-480 | www-abstr |
| - | Update on protein structure prediction: results of the 1995 IRBM workshop | T Hubbard, A Tramontano, G Barton, D Jones, M Sippl, A Valencia, A Lesk, J Moult, B Rost, C Sander, R Schneider, A Lahm, R Leplae, C Buta , M Eisenstein, O Fjellström, H Floeckner, JG Grossmann, J Hansen, M Helmer-Citterich, FS Joergensen, A Marchler-Bauer, J Osuna, J Park, A Reinhardt, L Ribas de Pouplana, A Rojo-Dominguez, V Saudek, J Sinclair, S Sturrock, C Venclovas and C Vinals (1996) Folding & Design, 1, R55-R63 | - |
| www-abstr | Protein fold recognition by merging 1D structure prediction and sequence alignments | B Rost (1996) | www-abstr |
| abstr | Fitting 1-D predictions into 3-D structures | B Rost (1995) in: 'Protein folds: a distance based approach' (eds. H Bohr and S Brunak), 132-151 | abstr |
| abstr | TOPITS: Threading One-dimensional Predictions Into Three-dimensional Structures | B Rost (1995) Third International Conference on Intelligent Systems for Molecular Biology, 314-321 | abstr |
| Evolution | |||
| www-abstr | Midnight zone of protein structure evolution | B Rost, S O'Donoghue and C Sander (1998) | www-abstr |
| www-abstr | Protein structures sustain evolutionary drift | B Rost (1997) Folding & Design, 2, S19-S24 | www-abstr |
| abstr | Combining evolutionary information and neural networks to predict protein secondary structure | B Rost and C Sander (1994) Proteins, 19, 55-72 | abstr |
| abstr | Prediction of protein secondary structure at better than 70% accuracy | B Rost and C Sander (1993) Journal of Molecular Biology, 232, 584-599 | abstr |
| Protein function | |||
| www-abstr | Adaptation of protein surfaces to subcellular location | MA Andrade, SI O'Donoghue and B Rost (1998) Journal of Molecular Biology, 276, 517-525 | www-abstr |
| abstr | Prediction of helical transmembrane segments at 95% accuracy | B Rost, R Casadio, P Fariselli and C Sander (1995) Protein Science, 4, 521-533 | abstr |
| Sequence analysis | |||
| www-abstr | Twilight zone of protein sequence alignments | B Rost (1999) Protein Engineering, 12, 85-94 | www-abstr |
| - | The role of transmembrane domains in the functions of B- and T-cell receptors | R Zidovetzki, B Rost and I Pecht (1998) Immunology Letters, 64, 97-107 | - |
| Reviews | |||
| www-abstr | 3rd generation prediction of secondary structure | B Rost and C Sander (1999) in: 'Predicting protein structure' (eds. DM Webster), in press | www-abstr |
| www-abstr | Evolution teaches neural networks | B Rost (1999) in: 'Scientific applications of neural nets' (eds. JW Clark, T Lindenau and ML Ristig) | www-abstr |
| www-abstr | Pedestrian guide to analysing sequence databases | B Rost and R Schneider (1999) in: 'Core techniques in biochemistry' (eds. K Ashman), in press | www-abstr |
| www-abstr | Neural networks for protein structure prediction: hype or hit? | B Rost (1999) | www-abstr |
| www-abstr-pdf | Protein structure prediction in 1D, 2D, and 3D | B Rost (1998) in: 'The Encyclopaedia of Computational Chemistry' (eds. PvR Schleyer, NL Allinger, T Clark, J Gasteiger, PA Kollman, HF Schaefer III and PR Schreiner), 3, 2242-2255 | www-abstr-pdf |
| www-abstr | Marrying structure and genomics | B Rost (1998) Structure, 6, 259-263 | www-abstr |
| www-abstr | Learning from evolution to predict protein structure | B Rost (1997) BCEC97: Bio-Computing and Emergent Computation, 87-101 | www-abstr |
| www-abstr | Sisyphus and prediction of protein structure | B Rost and SI O'Donoghue (1997) Computer Applications in Biological Science, 13, 345-356 | www-abstr |
| www | Sisyphus and protein structure prediction | B Rost (1997) 5th International Conference on Intelligent Systems for Molecular Biology, Tutorial | www |
| abstr | NN which predicts protein secondary structure | B Rost (1996) in: 'Handbook of Neural Computation' (eds. E Fiesler and R Beale), G4.1 | abstr |
| abstr | Bridging the protein sequence-structure gap by structure predictions | B Rost and C Sander (1996) Annual Review of Biophysics and Biomolecular Structure, 25, 113-136 | abstr |
| www-abstr | Pitfalls of protein sequence analysis | B Rost and A Valencia (1996) Current Opinion in Biotechnology, 7, 457-461 | www-abstr |
| abstr | Protein structure prediction by neural networks | B Rost and C Sander (1995) in: 'The handbook of brain theory and neural networks' (eds. M Arbib), 772-775 | abstr |
| abstr | Structure prediction of proteins - where are we now? | B Rost and C Sander (1994) Current Opinion in Biotechnology, 5, 372-380 | abstr |
| - | Neural networks in chemistry | B Rost and G Vriend (1993) CDA News, 8, 24-27 | - |
| abstr | Progress in protein structure prediction? | B Rost, C Sander and R Schneider (1993) TIBS, 18, 120-123 | abstr |
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