DAF format for a single pair alignment
The example contains the compulsory (bold) and recommended elements of a valid DAF format. Note:
- Keywords are mandatory (ALISYM, NPAIRS, idSeq, idStr, lenSeq, lenStr, seq, str).
- Lines starting with # and no keyword will be ignored.
- Columns are separated by tabs or blanks.
- For a simple rank analysis you can skip the sequences.
Notation:
- 'seq' = sequence of search sequence U,
- 'str' = sequence of database protein.
# DAF (dirty alignment format for exchange with Aqua)
# ALISYM ACDEFGHIKLMNPQRSTVWY.acdefghiklmnpqrstvwy
# NPAIRS 1
# ALIGNMENTS
| idSeq |
idStr |
lenSeq |
lenStr |
lenAli |
pide |
seq |
str |
| 1acf
| 2btfP
| 125
| 513
| 19
| 17
| SWQTYVDTNL...GAVTQ
| GWNAYID.NLMADGTCQD
|
