MSA-related software
Other pages with lists of multiple sequence
alignment-related software
Rod
Page's lab at the University of Glasgow, Scotland.
University of Lyon
ExPASy
Automatic MSA Software
CLUSTALX
for Download
CLUSTAW for Download
MUSCLE for Download
MAFFT
for Download
PROBCONS for
Download
MUSCLE
Server
MAFFT
Server
CLUSTALW
Server (ch.EMBnet.org)
CLUSTALW Server (EBI)
PROBCONS Server (Results
only by e-mail)
MSA Editors
SEAVIEW
JALVIEW
3D Structural Visualisation
PyMOL
Processing Alignments for Phylogenetic Analysis
GBLOCKS
server
GBLOCKS for
download
Reverse-Translating Protein MSAs onto Nucleic Acid Sequences
RevTrans Server
RevTrans
for Download
Secondary Structure Prediction from MSAs
JPRED
Sequence Similarity Searches
BLAST at EBI
BLAST
at NCBI
Keyword Searches for Sequences
SRS
- EBI
SRS - EMBL
ENTREZ - NCBI
API for Manipulating MSA data
BioPerl
Phylogenetic Tree Visualisation
NJPLOT
Protein to Genomic Nucleic Acid Alignment
GENEWISE Server
GENEWISE to Download
Back
to Gibson Team course pages at EMBL.