MSA-related software


Other pages with lists of multiple sequence alignment-related software

Rod Page's lab at the University of Glasgow, Scotland.
University of Lyon
ExPASy

Automatic MSA Software

CLUSTALX for Download
CLUSTAW for Download
MUSCLE for Download
MAFFT for Download
PROBCONS for Download

MUSCLE Server
MAFFT Server
CLUSTALW Server (ch.EMBnet.org)
CLUSTALW Server (EBI)
PROBCONS Server (Results only by e-mail)

MSA Editors

SEAVIEW
JALVIEW

3D Structural Visualisation

PyMOL

Processing Alignments for Phylogenetic Analysis

GBLOCKS server
GBLOCKS for download

Reverse-Translating Protein MSAs onto Nucleic Acid Sequences

RevTrans Server
RevTrans for Download

Secondary Structure Prediction from MSAs

JPRED

Sequence Similarity Searches

BLAST at EBI
BLAST at NCBI

Keyword Searches for Sequences

SRS - EBI
SRS - EMBL
ENTREZ - NCBI

API for Manipulating MSA data

BioPerl

Phylogenetic Tree Visualisation

NJPLOT

Protein to Genomic Nucleic Acid Alignment

GENEWISE Server
GENEWISE to Download



Back to Gibson Team course pages at EMBL.