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TrainingExploring Protein Modular ArchitectureWednesday January 30th - Friday February 1st, 2008, EMBL HeidelbergAims to introduce experimental scientists to computational tools that help identify architecture modules (domains, motifs, disordered regions) in eukaryotic protein sequences. These tools can provide valuable insights into potential structure/function relationships that may provide a basis for novel experiments. Contact Aidan Budd or Toby Gibson for more information. Some photos taken during the teaching (thanks to Sebastien)ScheduleWednesday Jan 30th10.00 - 11.00 Introduction to
Protein Modular Architecture and its role in cell regulation
Toby Gibson
11.00 - 12.30 Keyword Searching of
Databases - SRS
12.30 - 13.30 Lunch Break
13.30 - 15.00 Sequence
Database
Similarity Searches - BLAST
15.00 - 16.00 Automatic annotation
of biological entities in webpages: Reflect
16.00 - 17.30 Exploring protein
structure using SRS 3D
Thursday Jan 31st10.00 - 11.30 Predicting Globular
Domains - PFAM, SMART, CDD
11.30 - 12.30 Predicting Native
Disorder - IUPred, DisProt, GlobPlot
12.30 - 13.30 Lunch Break
15.00 - 17.00 Multiple Sequence
Alignment
Friday February 1st10.00 - 12.30 Structure of
Protein-Protein Interactions - PyMOL,
PDB, MSD
12.30 - 13.30 Lunch Break
13.30 - 15.30 Functional Association
Networks - STRING, STITCH
15.30 - 17.00 Student Team
Presentations
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