USR1:A(size=496) vs USR2:A(size=750)
Structure Alignment		 Rmsd = 3.8Å Z-Score = 5.6
Sequence identity = 15.5%
Aligned/gap positions = 328/194
Sequence alignment based on structure alignment.
Sequence alignment based on structure alignment. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB.

USR1:A - MOL_ID: 1; MOLECULE: AMYLASE; CHAIN: A; EC: 3.2.1.1; OTHER_DETAILS: HUMAN SALIVARY AMYLASE

USR2:A - MOL_ID: 1; MOLECULE: ISOAMYLASE; CHAIN: A; SYNONYM: GLYCOGEN 6-GLUCANOHYDROLASE; EC: 3.2.1.68

 




  USR1:A   10/11    RTSIVHLFEW---------------RWVDIALECERYLAPKGFGGVQVSPPNENVAIHN-
  USR2:A  178/179   DDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKAS-YLASLGVTAVEFLPVQETQNDAND


  USR1:A   54/55    ------PFRPWWERYQPVSYKLCTRSG-------NEDEFRNMVTRCNNVGVRIYVDAVIN
  USR2:A  237/238   VVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYN


  USR1:A  101/102   HMCGN----------AVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIEN
  USR2:A  297/298   HTAEGGTWTSSDPTTAT------------IYSWRG-----LDNATYYELTSGNQYFY---


  USR1:A  151/152   YNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLID-IGVAGFRIDASKHMWP-----
  USR2:A  337/338   ---------DNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNG


  USR1:A  205/206   ----------------------GDIKAILDKLHNLNSNWFPEG-----SKPFIYQEVIDL
  USR2:A  388/389   AYTASAPNCPNGGYNFDAADSNVAINRILREFTV--------RPAAGGSGLDLFAEPWAI


  USR1:A  238/239   GGEPIKSSDYFGNGRVTEFKYGAKLGTVIRKWNGEKMSYLKNWGEGW----GFMP-----
  USR2:A  440/441   GGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMT--IYVTQDANDFSGSSNLFQSSGR


  USR1:A  289/290   -SDRALVFVDNHDNQ---------------------RGHGAGGASILTFWD---------
  USR2:A  498/499   SPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSW---DQGMSAGTGA


  USR1:A  318/319   ---ARLYKMAVGFMLAHPYGFTRVMSS----YRWPRYFENGKDVNDWVGPPNDNGVTKEV
  USR2:A  555/556   AVDQRRAARTGMAFEMLSAGTPLMQGGDEYLRTLQC------NNNAYNLDS---------


  USR1:A  371/372   TINPDTTCGNDWVCEH--------RWRQIRNMVNFRNVVDGQ
  USR2:A  600/601   ---------SANWLTYSWTTDQSNFYTFAQRLIAFRKAHPAL
View Results:
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Quick view of structure alignment (using Rasmol)

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View of structure alignment using Protein Explorer