EMBOSS Align Results

Needle Results
Matrix	Blosum62
Open gap penalty	10.0
Gap extension penalty	0.5
Needle output	needle-20090210-05492526039040.output
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# Program:  needle
# Rundate:  Tue Feb 10 05:49:25 2009
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/needle-20090210-05492526039040.output
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 1smd
# 2: 1bf2
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 649
# Identity:     117/649 (18.0%)
# Similarity:   178/649 (27.4%)
# Gaps:         238/649 (36.7%)
# Score: 115.5
# 
#
#=======================================

1smd               1              GRTSIVHLFEWRWVDIALECERYLAPKGFGGVQVSPP     37
                                  ..|||...:...:....|:.. |||..|...|:..|.
1bf2               1 DVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKAS-YLASLGVTAVEFLPV     49

1smd              38 NENVAIHNPFRP-------WW----ERY----QPVSYKLCTRSGNEDEFR     72
                     .|.....|...|       :|    |.|    :..:|.... .|...||:
1bf2              50 QETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAA-GGPTAEFQ     98

1smd              73 NMVTRCNNVGVRIYVDAVINHMCGNAV---SAGTSSTCGSYFNPGSRDFP    119
                     .||...:|.|:::|:|.|.||......   |..|::|..|:....:..:.
1bf2              99 AMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYY    148

1smd             120 AVPYSGWDFNDGKCKTGSG-DIENYNDATQVRDCRLSGLLDLALGKDYVR    168
                     .:......|.|   .||.| :...||...|                :.:.
1bf2             149 ELTSGNQYFYD---NTGIGANFNTYNTVAQ----------------NLIV    179

1smd             169 SKIAEYMNHLIDIGVAGFRIDASKHMWPGDIKAILDKLHNLNSNWFPEGS    218
                     ..:|.:.|   .:||.|||.|.:..:.    .:.|:..:..::...|.|.
1bf2             180 DSLAYWAN---TMGVDGFRFDLASVLG----NSCLNGAYTASAPNCPNGG    222

1smd             219 KPF-----------IYQEV----------IDLGGEP--IKSSDYFGNGRV    245
                     ..|           |.:|.          :||..||  |..:.|...|  
1bf2             223 YNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGG--    270

1smd             246 TEFKYGAKLGTVIRKWNGEKMSYLKNWGEGWG------------------    277
                       |..|..      :|||.....|:......|                  
1bf2             271 --FPQGWS------EWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSN    312

1smd             278 -FMPSDR----ALVFVDNHDNQRGHGAGGASILTFWDARLYKMAVGFMLA    322
                      |..|.|    ::.|:|.||                         |..|.
1bf2             313 LFQSSGRSPWNSINFIDVHD-------------------------GMTLK    337

1smd             323 HPYGFTRVMSSYRWPRYFENGKDVNDWVGPPNDNGVTKEVTINPDTTCGN    372
                     ..|......:|..||.             .|:|.|.:...:.:...:.|.
1bf2             338 DVYSCNGANNSQAWPY-------------GPSDGGTSTNYSWDQGMSAGT    374

1smd             373 DWVCEHRWRQIRNMVNFRNVVDGQPF-----------------------T    399
                     ....:.| |..|..:.|..:..|.|.                       .
1bf2             375 GAAVDQR-RAARTGMAFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSA    423

1smd             400 NW--YDNGSNQVAFGRGNRGFIVFNN-------DDWTFSLTLQTGLPAGT    440
                     ||  |...::|..|....:..|.|..       ..|.....|....|:|.
1bf2             424 NWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSGA    473

1smd             441 YCD---------VISGDKINGNCTG--IKIYVSDDG---KAHFSIS----    472
                     ..|         ......|||...|  ..|||:.:|   ...|::.    
1bf2             474 VADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPS    523

1smd             473 -------------NSAEDPFIAIHAESKL                        488
                                  |.....|:|..:|:.:                    
1bf2             524 GTQWYRVTDTCDWNDGASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK    572


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