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EMBOSS Align Results


Water Results
Matrix Blosum62
Open gap penalty 10.0
Gap extension penalty 0.5
Water output water-20090210-05495738214217.output



########################################
# Program:  water
# Rundate:  Tue Feb 10 05:49:57 2009
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/water-20090210-05495738214217.output
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 1smd
# 2: 1bf2
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 571
# Identity:     112/571 (19.6%)
# Similarity:   167/571 (29.2%)
# Gaps:         185/571 (32.4%)
# Score: 123.5
# 
#
#=======================================

1smd               3 TSIVHLFEWRWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRP---     49
                     |||...:...:....|:.. |||..|...|:..|..|.....|...|   
1bf2              16 TSIPAQYRGTYYGAGLKAS-YLASLGVTAVEFLPVQETQNDANDVVPNSD     64

1smd              50 ----WW----ERY----QPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIYV     87
                         :|    |.|    :..:|.... .|...||:.||...:|.|:::|:
1bf2              65 ANQNYWGYMTENYFSPDRRYAYNKAA-GGPTAEFQAMVQAFHNAGIKVYM    113

1smd              88 DAVINHMCGNAV---SAGTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCK    134
                     |.|.||......   |..|::|..|:....:..:..:......|.|   .
1bf2             114 DVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYD---N    160

1smd             135 TGSG-DIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGV    183
                     ||.| :...||...|                :.:...:|.:.|   .:||
1bf2             161 TGIGANFNTYNTVAQ----------------NLIVDSLAYWAN---TMGV    191

1smd             184 AGFRIDASKHMWPGDIKAILDKLHNLNSNWFPEGSKPF-----------I    222
                     .|||.|.:..:.    .:.|:..:..::...|.|...|           |
1bf2             192 DGFRFDLASVLG----NSCLNGAYTASAPNCPNGGYNFDAADSNVAINRI    237

1smd             223 YQEV----------IDLGGEP--IKSSDYFGNGRVTEFKYGAKLGTVIRK    260
                     .:|.          :||..||  |..:.|...|    |..|..      :
1bf2             238 LREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGG----FPQGWS------E    277

1smd             261 WNGEKMSYLKNWGEGWG-------------------FMPSDR----ALVF    287
                     |||.....|:......|                   |..|.|    ::.|
1bf2             278 WNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINF    327

1smd             288 VDNHDNQRGHGAGGASILTFWDARLYKMAVGFMLAHPYGFTRVMSSYRWP    337
                     :|.||                         |..|...|......:|..||
1bf2             328 IDVHD-------------------------GMTLKDVYSCNGANNSQAWP    352

1smd             338 RYFENGKDVNDWVGPPNDNGVTKEVTINPDTTCGNDWVCEHRWRQIRNMV    387
                     .             .|:|.|.:...:.:...:.|.....:.| |..|..:
1bf2             353 Y-------------GPSDGGTSTNYSWDQGMSAGTGAAVDQR-RAARTGM    388

1smd             388 NFRNVVDGQPF-----------------------TNW--YDNGSNQVAFG    412
                     .|..:..|.|.                       .||  |...::|..|.
1bf2             389 AFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFY    438

1smd             413 RGNRGFIVFNN-------DDWTFSLTLQTGLPAGTYCD---------VIS    446
                     ...:..|.|..       ..|.....|....|:|...|         ...
1bf2             439 TFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAI    488

1smd             447 GDKINGNCTG--IKIYVSDDG    465
                     ...|||...|  ..|||:.:|
1bf2             489 AYAINGPSLGDSNSIYVAYNG    509


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