EMBOSS Align Results

Needle Results
Matrix	Blosum62
Open gap penalty	10.0
Gap extension penalty	0.5
Needle output	needle-20090210-05334712660185.output
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# Program:  needle
# Rundate:  Tue Feb 10 05:33:47 2009
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/needle-20090210-05334712660185.output
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#=======================================
#
# Aligned_sequences: 2
# 1: 5ptp
# 2: 1ton
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 236
# Identity:      96/236 (40.7%)
# Similarity:   132/236 (55.9%)
# Gaps:          14/236 ( 5.9%)
# Score: 471.5
# 
#
#=======================================

5ptp               1 IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRL     50
                     |||||.|..|:.|:||::.:.| .|||.||:..||::|||||.:..||.|
1ton               1 IVGGYKCEKNSQPWQVAVINEY-LCGGVLIDPSWVITAAHCYSNNYQVLL     49

5ptp              51 GEDNINVVEGNEQFISASKSIVHPSY-----NSNT------LNNDIMLIK     89
                     |.:|:...|...|.....:|..||.|     .::|      .:||:||:.
1ton              50 GRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLH     99

5ptp              90 LKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLK    139
                     |...|.:...|..|.|||.....|:.||.||||:|..|.......|:|:.
1ton             100 LSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVN    149

5ptp             140 APILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQG    189
                     ..:||:..|...|...:|..|.|||.:|||||:|.||||||::|.|.|||
1ton             150 IHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDGVLQG    199

5ptp             190 IVSWG-SGCAQKNKPGVYTKVCNYVSWIKQTIASN     223
                     |.|.| :.||:...|.:|.|:..:.||||:.:..| 
1ton             200 ITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP    235


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