USR1:A(size=223) vs USR2:A(size=235)
Structure Alignment		 Rmsd = 1.4Å Z-Score = 7.1
Sequence identity = 42.4%
Aligned/gap positions = 217/23
Sequence alignment based on structure alignment.
Sequence alignment based on structure alignment. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB.

USR1:A - MOL_ID: 1; MOLECULE: BETA TRYPSIN; CHAIN: A; EC: 3.4.21.4

USR2:A - MOL_ID: 1; MOLECULE: TONIN; CHAIN: A; ENGINEERED: YES

 




  USR1:A    1/17    IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG
  USR2:A    1/17    IVGGYKCEKNSQPWQVAVIN-EYLCGGVLIDPSWVITAAHCYSNNYQVLLGRNNLFKDEP


  USR1:A   61/80    NEQFISASKSIVHPSYNS-----------NTLNNDIMLIKLKSAASLNSRVASISLPTSC
  USR2:A   60/80    FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKE


  USR1:A  110/130   ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQI-----TSNMFCAG
  USR2:A  120/131   PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI-----ETYKDNVTDVMLCAG


  USR1:A  165/185   YLEGGKDSCQGDXGGPVVCSGKLQGIVSWGS-GCAQKNKPGVYTKVCNYVSWIKQTIASN
  USR2:A  175/186   EMEGGKDTCAGDSGGPLICDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKEN
View Results:
Download alignment as a PDB file

Quick view of structure alignment (using Rasmol)

Detailed analysis of alignment (using Compare3D Java applet)

Notes: (i) On some platforms (IntermnetExplorer7) Compare3D starts from the second click (ii) Compare3D may not work with some versions of InternetExplorer or across the firewall

View of structure alignment using Protein Explorer