Common Bioinformatics Teaching Resources

Aidan Budd

Training Exercises

• Multiple sequence alignments
• Interpreting and estimating phylogenies
• Protein architecture
• Protein structure and function
  

Guides to Specific Software

• CLUSTALX
  
• CONSENSE (from the PHYLIP package)
  
• Dendroscope
• Jalview
  
• MESQUITE
• NJplot
• ProtTest
• RAxML
• PyMOL
• SplitsTree

Guides to Common Webserver-Based Tasks

• Building Structural Alignments
• Obtaining Pre-calculated Trees and Alignments

Additional Links

• References
• Links to Webservers and Software