MSA Exercises

Aidan Budd and Tomas Larsson

1. "Manual" Alignments using JalView

2. Structure-Based Interpretation of Alignments

3. Exampes of Non-Equivalence of Evolutionary and Structural Alignment

4. Comparing the quality of sequence-based and structure-based alignments (depending on trainee's interests)

5. Compatibility of Multiple Pairwise Alignments

6. Using MSA Software to Build an MSA Automatically

7. MSA Analysis from Start to Finish

8. Comparing Results from Different Automatic MSA Tools

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