Introduction to Multiple Sequence Alignment (MSAs) and Phylogenies

Monday 17th - Tuesday 18th December, 2012

Department of Genetics, University of Cambridge, UK

Aidan Budd, Terri Attwood, and Sarah Parks


This introductory two-day courses focuses on multiple sequence alignment (MSA) and phylogenetics - tools important for a wide range of different bioinformatic analyses e.g. protein structure prediction, comparative genomics etc.

The course will focus on providing experience of examining, manipulating, and interpreting the results of these analyses: in particular of tree topologies, branch lengths, roots, splits, and positional equivalence in MSAs. Another focus will be on giving examples of biological questions that can be investigated using MSAs and phylogenies.

Please note that the focus is on protein sequences - although in some places, examples will include nucleic acid sequences.

Exercises

Presentations

Guides to Specific Software

Webserver "How To"s

References

Links to software and webservers


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