Multiple Sequence Alignment Exercises

Aidan Budd

1. Introducting Pairwise/Multiple Sequence Alignments with JalView

• Demonstration

• Exercises

2. Structure-Based Interpretation of Alignments

3. Exampes of Non-Equivalence of Evolutionary and Structural Alignment

4. Phylogeny/MSA Analysis from Start to Finish

• Demonstration and Exercise

5. Patterns of Conservation in Protein Alignments