Multiple Sequence Alignments (MSAs) And Phylogenies - SOFTWARE


Contents:

Pairwise sequence alignment

Structural Alignment

3D Protein Structure Databases

Resources/Databases providing pre-calculated Multiple Sequence Alignments

Multiple Sequence Alignment Servers

Multiple Sequence Alignment Reference Sets

Locally Installed Software

Dendroscope (JAVA Phylogeny/Tree Viewer)

NJPLOT

CLUSTALX

SEAVIEW

JALVIEW

PyMOL

MESQUITE

Other Protein Sequence Analysis Tools

Phylogeny-Related Servers

Databases/Resources exploring known trees

Phylogeny software


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